Search results for the GEO ID: GSE14962  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM373567 | GPL85 |
|
VAD_Normalized
|
Vitamin A deficient testis
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis
|
| Sample_geo_accession | GSM373567
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default parameters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373567 | GPL85 |
|
VAD_Normalized
|
Vitamin A deficient testis
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis
|
| Sample_geo_accession | GSM373567
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default parameters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373567 | GPL85 |
|
VAD_Normalized
|
Vitamin A deficient testis
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis
|
| Sample_geo_accession | GSM373567
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default parameters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373567 | GPL85 |
|
VAD_Normalized
|
Vitamin A deficient testis
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis
|
| Sample_geo_accession | GSM373567
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default parameters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373567 | GPL85 |
|
VAD_Normalized
|
Vitamin A deficient testis
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis
|
| Sample_geo_accession | GSM373567
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default parameters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373567/suppl/GSM373567_VAD_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373593 | GPL85 |
|
4hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 4hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 4hrs
|
| Sample_geo_accession | GSM373593
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373593 | GPL85 |
|
4hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 4hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 4hrs
|
| Sample_geo_accession | GSM373593
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373593 | GPL85 |
|
4hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 4hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 4hrs
|
| Sample_geo_accession | GSM373593
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373593 | GPL85 |
|
4hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 4hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 4hrs
|
| Sample_geo_accession | GSM373593
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373593 | GPL85 |
|
4hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 4hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 4hrs
|
| Sample_geo_accession | GSM373593
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373593/suppl/GSM373593_4hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373594 | GPL85 |
|
8hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 8hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 8hrs
|
| Sample_geo_accession | GSM373594
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373594 | GPL85 |
|
8hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 8hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 8hrs
|
| Sample_geo_accession | GSM373594
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373594 | GPL85 |
|
8hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 8hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 8hrs
|
| Sample_geo_accession | GSM373594
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373594 | GPL85 |
|
8hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 8hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 8hrs
|
| Sample_geo_accession | GSM373594
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373594 | GPL85 |
|
8hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 8hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 8hrs
|
| Sample_geo_accession | GSM373594
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373594/suppl/GSM373594_8hr_RO_Replenishment_Rep5.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373595 | GPL85 |
|
24hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 24hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 24hrs
|
| Sample_geo_accession | GSM373595
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373595 | GPL85 |
|
24hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 24hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 24hrs
|
| Sample_geo_accession | GSM373595
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373595 | GPL85 |
|
24hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 24hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 24hrs
|
| Sample_geo_accession | GSM373595
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
|
GSM373595 | GPL85 |
|
24hr_RO_Normalized
|
Vitamin A deficient testis treated with retinol for 24hrs
|
tissue: Total testis
|
Gene expression data from vitamin a deficient testis treated with retinol for 24hrs
|
| Sample_geo_accession | GSM373595
| | Sample_status | Public on Feb 27 2009
| | Sample_submission_date | Feb 23 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Ambion RNaqueous RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125. Data was then normalized in Genespring 7.3 using default paramaters. The normalized signal value is the mean of the replicates for each sample.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM373nnn/GSM373595/suppl/GSM373595_24hr_RO_Replenishment_Rep4.CEL.gz
| | Sample_series_id | GSE14962
| | Sample_data_row_count | 8799
| | |
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