Search results for the GEO ID: GSE14997  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM374610 | GPL1261 |
|
A155_7459_control_rep1
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 35
treatment: doxycycline throughout
|
Female C57Bl/6 HT transgenic, maintained on doxycyline throughout , muscle tissue, age at sacrifice 35 days
|
| Sample_geo_accession | GSM374610
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374610/suppl/GSM374610.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
GSM374611 | GPL1261 |
|
A155_7458_control_rep2
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 35
treatment: doxycycline throughout
|
Female C57Bl/6 HT transgenic, maintained on doxycyline throughout , muscle tissue, age at sacrifice 35 days
|
| Sample_geo_accession | GSM374611
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374611/suppl/GSM374611.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
GSM374612 | GPL1261 |
|
A155_7460_control_rep3
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 35
treatment: doxycycline throughout
|
Female C57Bl/6 HT transgenic, maintained on doxycyline throughout , muscle tissue, age at sacrifice 35 days
|
| Sample_geo_accession | GSM374612
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374612/suppl/GSM374612.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
GSM374613 | GPL1261 |
|
A155_7423_early_rep1
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 35
treatment: doxycycline stopped age 21 days
|
Female C57Bl/6 HT transgenic,doxycyline stopped age 21 days , muscle tissue, age at sacrifice 35 days
|
| Sample_geo_accession | GSM374613
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374613/suppl/GSM374613.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
GSM374614 | GPL1261 |
|
A155_7425_early_rep2
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 35
treatment: doxycycline stopped age 21 days
|
Female C57Bl/6 HT transgenic,doxycyline stopped age 21 days , muscle tissue, age at sacrifice 35 days
|
| Sample_geo_accession | GSM374614
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374614/suppl/GSM374614.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
GSM374615 | GPL1261 |
|
A155_7443_early_rep3
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 35
treatment: doxycycline stopped age 21 days
|
Female C57Bl/6 HT transgenic,doxycyline stopped age 21 days , muscle tissue, age at sacrifice 35 days
|
| Sample_geo_accession | GSM374615
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374615/suppl/GSM374615.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
GSM374616 | GPL1261 |
|
A155_8423_late_rep1
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 50
treatment: doxycycline stopped age 35 days
|
Female C57Bl/6 HT transgenic,doxycyline stopped age 35 days , muscle tissue, age at sacrifice 50 days
|
| Sample_geo_accession | GSM374616
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374616/suppl/GSM374616.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
GSM374617 | GPL1261 |
|
A155_8424_late_rep2
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 50
treatment: doxycycline stopped age 35 days
|
Female C57Bl/6 HT transgenic,doxycyline stopped age 35 days , muscle tissue, age at sacrifice 50 days
|
| Sample_geo_accession | GSM374617
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374617/suppl/GSM374617.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
GSM374618 | GPL1261 |
|
A155_7444_late_rep3
|
Quadriceps femoris
|
gender: Female
tissue: muscle
strain: C57Bl/6 HT transgenic
age at sacrifice (days): 50
treatment: doxycycline stopped age 35 days
|
Female C57Bl/6 HT transgenic,doxycyline stopped age 35 days , muscle tissue, age at sacrifice 50 days
|
| Sample_geo_accession | GSM374618
| | Sample_status | Public on Jun 02 2009
| | Sample_submission_date | Feb 25 2009
| | Sample_last_update_date | Feb 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | early mice were removed from doxycycline at 21 days, and sacrificed at 35 days of age, after 2 weeks of transgene expression. late mice were maintained on doxycycline until 35 days and sacrificed at 49-50 days of age. Single transgenic littermate controls were age, sex-matched,maintained on doxycycline and sacrificed as the early group
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 100mg of quadriceps muscle using RNAB (Campro Scientific, Berlin germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Mouse Genome 430 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| | Sample_data_processing | Data was normalised using GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Lucy,R,Wedderburn
| | Sample_contact_department | Rheumatology
| | Sample_contact_institute | Institute of Child Health, UCL
| | Sample_contact_address | 30 Guilford Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1N 1EH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM374nnn/GSM374618/suppl/GSM374618.CEL.gz
| | Sample_series_id | GSE14997
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
