Search results for the GEO ID: GSE15013  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM304968 | GPL570 |
|
tMLL01
|
tMLL01
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM304968
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304968/suppl/GSM304968.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304968/suppl/GSM304968.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307951 | GPL570 |
|
tMLL02
|
tMLL02
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307951
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 27 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307951/suppl/GSM307951.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307951/suppl/GSM307951.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307952 | GPL570 |
|
tMLL03
|
tMLL03
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307952
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 27 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307952/suppl/GSM307952.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307952/suppl/GSM307952.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307953 | GPL570 |
|
tMLL04
|
tMLL04
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307953
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 27 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307953/suppl/GSM307953.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307953/suppl/GSM307953.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307957 | GPL570 |
|
tMLL05
|
tMLL05
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307957
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 28 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307957/suppl/GSM307957.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307957/suppl/GSM307957.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307958 | GPL570 |
|
tMLL06
|
tMLL06
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307958
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 28 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307958/suppl/GSM307958.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307958/suppl/GSM307958.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307959 | GPL570 |
|
tMLL07
|
tMLL07
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307959
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 28 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307959/suppl/GSM307959.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307959/suppl/GSM307959.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307960 | GPL570 |
|
tMLL08
|
tMLL08
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307960
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 28 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307960/suppl/GSM307960.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307960/suppl/GSM307960.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307961 | GPL570 |
|
tMLL09
|
tMLL09
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307961
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 28 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307961/suppl/GSM307961.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307961/suppl/GSM307961.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM307966 | GPL570 |
|
tMLL10
|
tMLL10
|
genotype: MLL translocation
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM307966
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Jul 28 2008
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_data_processing |
| | Sample_data_processing |
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307966/suppl/GSM307966.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307966/suppl/GSM307966.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366160 | GPL570 |
|
MLL_PTD01
|
MLL_PTD01
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366160
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366160/suppl/GSM366160.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366160/suppl/GSM366160.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366161 | GPL570 |
|
MLL_PTD02
|
MLL_PTD02
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366161
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366161/suppl/GSM366161.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366161/suppl/GSM366161.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366162 | GPL570 |
|
MLL_PTD03
|
MLL_PTD03
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366162
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366162/suppl/GSM366162.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366162/suppl/GSM366162.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366163 | GPL570 |
|
MLL_PTD04
|
MLL_PTD04
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366163
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366163/suppl/GSM366163.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366163/suppl/GSM366163.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366164 | GPL570 |
|
MLL_PTD05
|
MLL_PTD05
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366164
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366164/suppl/GSM366164.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366164/suppl/GSM366164.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366165 | GPL570 |
|
MLL_PTD06
|
MLL_PTD06
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366165
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366165/suppl/GSM366165.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366165/suppl/GSM366165.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366166 | GPL570 |
|
MLL_PTD07
|
MLL_PTD07
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366166
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366166/suppl/GSM366166.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366166/suppl/GSM366166.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366167 | GPL570 |
|
MLL_PTD08
|
MLL_PTD08
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366167
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366167/suppl/GSM366167.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366167/suppl/GSM366167.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366168 | GPL570 |
|
MLL_PTD09
|
MLL_PTD09
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366168
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366168/suppl/GSM366168.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366168/suppl/GSM366168.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366169 | GPL570 |
|
MLL_PTD10
|
MLL_PTD10
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366169
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366169/suppl/GSM366169.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366169/suppl/GSM366169.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366170 | GPL570 |
|
MLL_PTD11
|
MLL_PTD11
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366170
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366170/suppl/GSM366170.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366170/suppl/GSM366170.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366171 | GPL570 |
|
MLL_PTD12
|
MLL_PTD12
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366171
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366171/suppl/GSM366171.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366171/suppl/GSM366171.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366172 | GPL570 |
|
MLL_PTD13
|
MLL_PTD13
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366172
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366172/suppl/GSM366172.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366172/suppl/GSM366172.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366173 | GPL570 |
|
MLL_PTD14
|
MLL_PTD14
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366173
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366173/suppl/GSM366173.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366173/suppl/GSM366173.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
| | |
|
GSM366174 | GPL570 |
|
MLL_PTD15
|
MLL_PTD15
|
genotype: MLL partial tandem duplication
|
Gene expression data from bone marrow
|
| Sample_geo_accession | GSM366174
| | Sample_status | Public on Jun 30 2011
| | Sample_submission_date | Feb 01 2009
| | Sample_last_update_date | Jun 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. The integrity of the RNA was assessed using the RNA 6000 Nano assay kit on a Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix according to manufacturer's instructions.
| | Sample_hyb_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_scan_protocol | Standard Affymetrix according to manufacturer's instructions.
| | Sample_data_processing | Probeset intensities were extracted from CEL-files using GeneChip Operating Software (GCOS) (Affymetrix). Probe intensities were normalized. Differentially expressed genes between mixed lineage leukemia translocation (tMLL) and MLL-partial tandem duplication (MLL-PTD) subgroups were calculated using the Student t-test.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hsi-Che,,Liu
| | Sample_contact_email | hsiche@ms1.mmh.org.tw
| | Sample_contact_institute | Mackay Memorial Hospital
| | Sample_contact_address | No. 92, Sec. 2, Chung-San North Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 10449
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366174/suppl/GSM366174.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366174/suppl/GSM366174.CHP.gz
| | Sample_series_id | GSE15013
| | Sample_data_row_count | 54675
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Make groups for comparisons |
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| Select GSMs and click on "Add groups" |
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