Search results for the GEO ID: GSE15083 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM377338 | GPL570 |
|
PA184
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA184
|
Sample_geo_accession | GSM377338
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377338/suppl/GSM377338.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377339 | GPL570 |
|
PA192
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA192
|
Sample_geo_accession | GSM377339
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377339/suppl/GSM377339.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377340 | GPL570 |
|
PA195
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA195
|
Sample_geo_accession | GSM377340
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377340/suppl/GSM377340.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377341 | GPL570 |
|
PA203
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA203
|
Sample_geo_accession | GSM377341
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377341/suppl/GSM377341.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377342 | GPL570 |
|
PA207
|
Synovial fluid mononuclear cells
|
outcome at one year: extended
cell type: Synovial fluid mononuclear cells
|
PA207
|
Sample_geo_accession | GSM377342
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377342/suppl/GSM377342.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377343 | GPL570 |
|
PA80
|
Synovial fluid mononuclear cells
|
outcome at one year: extended
cell type: Synovial fluid mononuclear cells
|
PA80
|
Sample_geo_accession | GSM377343
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377343/suppl/GSM377343.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377344 | GPL570 |
|
PA92
|
Synovial fluid mononuclear cells
|
outcome at one year: extended
cell type: Synovial fluid mononuclear cells
|
PA92
|
Sample_geo_accession | GSM377344
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377344/suppl/GSM377344.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377345 | GPL570 |
|
PA215
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA215
|
Sample_geo_accession | GSM377345
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377345/suppl/GSM377345.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377346 | GPL570 |
|
PA224
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA224
|
Sample_geo_accession | GSM377346
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377346/suppl/GSM377346.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377347 | GPL570 |
|
PA55
|
Synovial fluid mononuclear cells
|
outcome at one year: extended
cell type: Synovial fluid mononuclear cells
|
PA55
|
Sample_geo_accession | GSM377347
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377347/suppl/GSM377347.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377348 | GPL570 |
|
PA94
|
Synovial fluid mononuclear cells
|
outcome at one year: extended
cell type: Synovial fluid mononuclear cells
|
PA94
|
Sample_geo_accession | GSM377348
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377348/suppl/GSM377348.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377349 | GPL570 |
|
PA102
|
Synovial fluid mononuclear cells
|
outcome at one year: extended
cell type: Synovial fluid mononuclear cells
|
PA102
|
Sample_geo_accession | GSM377349
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377349/suppl/GSM377349.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377350 | GPL570 |
|
PA124
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA124
|
Sample_geo_accession | GSM377350
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377350/suppl/GSM377350.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377351 | GPL570 |
|
PA206
|
Synovial fluid mononuclear cells
|
outcome at one year: extended
cell type: Synovial fluid mononuclear cells
|
PA206
|
Sample_geo_accession | GSM377351
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377351/suppl/GSM377351.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377352 | GPL570 |
|
PA281
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA281
|
Sample_geo_accession | GSM377352
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377352/suppl/GSM377352.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377353 | GPL570 |
|
PA291
|
Synovial fluid mononuclear cells
|
outcome at one year: extended
cell type: Synovial fluid mononuclear cells
|
PA291
|
Sample_geo_accession | GSM377353
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377353/suppl/GSM377353.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377354 | GPL570 |
|
PA47
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA47
|
Sample_geo_accession | GSM377354
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377354/suppl/GSM377354.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377355 | GPL570 |
|
PA174
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
PA174
|
Sample_geo_accession | GSM377355
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377355/suppl/GSM377355.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377356 | GPL570 |
|
RVI037
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
RVI037
|
Sample_geo_accession | GSM377356
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377356/suppl/GSM377356.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377357 | GPL570 |
|
RVI079
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
RVI079
|
Sample_geo_accession | GSM377357
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377357/suppl/GSM377357.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
GSM377358 | GPL570 |
|
RVI085
|
Synovial fluid mononuclear cells
|
outcome at one year: persistent
cell type: Synovial fluid mononuclear cells
|
RVI085
|
Sample_geo_accession | GSM377358
| Sample_status | Public on Mar 04 2009
| Sample_submission_date | Mar 03 2009
| Sample_last_update_date | Mar 03 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Synovial fluid was aspirated from patients' knees. Mononuclear cells were isolated using density centrifugation with Lymphoprep. Cells were preserved in liquid nitrogen
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Cell were thawed and RNA was extracted using Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was coverted to cDNA (Roche) using an oligod(T) primer and converted to cRNA using In Vitro Triscription labelling kit (Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the Affymetrix GeneChip Human U133 2.0 array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000.
| Sample_data_processing | Data was normalised using MAS5.0.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,Jean,Hunter
| Sample_contact_email | p.hunter@ich.ucl.ac.uk
| Sample_contact_phone | 44 207 905 2617
| Sample_contact_fax | 44 207 813 8494
| Sample_contact_department | Rheumatology
| Sample_contact_institute | UCL Institute of Child Health
| Sample_contact_address | 30 Guilford Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | WC1N 1EH
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377358/suppl/GSM377358.CEL.gz
| Sample_series_id | GSE15083
| Sample_data_row_count | 54675
| |
|
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Select GSMs and click on "Add groups" |
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