Search results for the GEO ID: GSE15090  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM377456 | GPL570 |
|
Subject 1, Family 1, Affected
|
human skeletal muscle
|
sex: Male
family: 1
age: 49
disease status: Affected
tissue: Muscle: Biceps
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377456
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377456/suppl/GSM377456.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377457 | GPL570 |
|
Subject 2, Family 1, Asymptomatic
|
human skeletal muscle
|
sex: Female
family: 1
age: 69
disease status: Asymptomatic
tissue: Muscle: Biceps
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377457
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377457/suppl/GSM377457.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377458 | GPL570 |
|
Subject 3, Family 1, Control
|
human skeletal muscle
|
sex: Female
family: 1
age: 41
disease status: Control
tissue: Muscle: Biceps
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377458
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377458/suppl/GSM377458.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377459 | GPL570 |
|
Subject 4, Family 2, Affected
|
human skeletal muscle
|
sex: Male
family: 2
age: 30
disease status: Affected
tissue: Muscle: Deltoid
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377459
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377459/suppl/GSM377459.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377460 | GPL570 |
|
Subject 5, Family 2, Asymptomatic
|
human skeletal muscle
|
sex: Male
family: 2
age: 66
disease status: Asymptomatic
tissue: Muscle: Deltoid
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377460
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377460/suppl/GSM377460.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377461 | GPL570 |
|
Subject 6, Family 2, Control
|
human skeletal muscle
|
sex: Female
family: 2
age: 38
disease status: Control
tissue: Muscle: Deltoid
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377461
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377461/suppl/GSM377461.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377462 | GPL570 |
|
Subject 7, Family 3, Affected
|
human skeletal muscle
|
sex: Female
family: 3
age: 14
disease status: Affected
tissue: Muscle: Deltoid
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377462
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377462/suppl/GSM377462.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377463 | GPL570 |
|
Subject 8, Family 3, Asymptomatic
|
human skeletal muscle
|
sex: Female
family: 3
age: 32
disease status: Asymptomatic
tissue: Muscle: Deltoid
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377463
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377463/suppl/GSM377463.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377464 | GPL570 |
|
Subject 9, Family 3, Control
|
human skeletal muscle
|
sex: Female
family: 3
age: 35
disease status: Control
tissue: Muscle: Deltoid
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377464
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377464/suppl/GSM377464.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377465 | GPL570 |
|
Subject 10, Family 4, Affected
|
human skeletal muscle
|
sex: Male
family: 4
age: 12
disease status: Affected
tissue: Muscle: Biceps
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377465
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377465/suppl/GSM377465.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377466 | GPL570 |
|
Subject 11, Family 4, Asymptomatic
|
human skeletal muscle
|
sex: Male
family: 4
age: 54
disease status: Asymptomatic
tissue: Muscle: Biceps
|
microarray hybridization data 07/11/2007
|
| Sample_geo_accession | GSM377466
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377466/suppl/GSM377466.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377467 | GPL570 |
|
Subject 12, Family 4, Control
|
human skeletal muscle
|
sex: Male
family: 4
age: 16
disease status: Control
tissue: Muscle: Biceps
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377467
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377467/suppl/GSM377467.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377468 | GPL570 |
|
Subject 13, Family 5, Affected
|
human skeletal muscle
|
sex: Male
family: 5
age: 38
disease status: Affected
tissue: Muscle: Biceps
|
microarray hybridization data 07/10/2007
|
| Sample_geo_accession | GSM377468
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377468/suppl/GSM377468.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377469 | GPL570 |
|
Subject 14, Family 5, Asymptomatic
|
human skeletal muscle
|
sex: Female
family: 5
age: 57
disease status: Asymptomatic
tissue: Muscle: Biceps
|
microarray hybridization data 07/11/2007
|
| Sample_geo_accession | GSM377469
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377469/suppl/GSM377469.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
GSM377470 | GPL570 |
|
Subject 15, Family 5, Control
|
human skeletal muscle
|
sex: Male
family: 5
age: 39
disease status: Control
tissue: Muscle: Biceps
|
microarray hybridization data 07/11/2007
|
| Sample_geo_accession | GSM377470
| | Sample_status | Public on Mar 04 2009
| | Sample_submission_date | Mar 03 2009
| | Sample_last_update_date | Mar 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Lab: University of São Paulo (Brazil)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from muscle tissue using the TRIReagent method (Molecular Research Center, Inc.) following the manufacturer’s protocol. Concentrations were determined using a NanoDrop 1000 spectrophotometer. Under standard conditions processing of RNAs for GeneChip Analysis was in accordance with methods described in the Affymetrix GeneChip Expression Analysis Technical Manual.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | In vitro transcription (IVT) was performed using the GeneChip Expression Amplification Reagents kit following the standard Affymetrix protocols.
| | Sample_hyb_protocol | 15 micrograms of fragmented cRNA were hybridized to U133 Plus 2.0 chips for 16 hours at 45 °C, 60 rpm. The chips were washed and stained in the Affymetrix Fluidics Station 450, using instructions and reagents provided by Affymetrix.
| | Sample_scan_protocol | The probe arrays were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377470/suppl/GSM377470.CEL.gz
| | Sample_series_id | GSE15090
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
