Search results for the GEO ID: GSE15103  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM375705 | GPL96 |
|
RD_with_PAX3-FKHR-ER_without_4-OHT_rep1
|
RD cell line transduced with PAX3-FKHR-ER without 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with PAX3-FKHR joined to the modified estrogen receptor ligand binding domain
|
| Sample_geo_accession | GSM375705
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | without 4-OHT treatment
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375705/suppl/GSM375705.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375705/suppl/GSM375705.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375706 | GPL96 |
|
RD_with_PAX3-FKHR-ER_without_4-OHT_rep2
|
RD cell line transduced with PAX3-FKHR-ER without 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with PAX3-FKHR joined to the modified estrogen receptor ligand binding domain
|
| Sample_geo_accession | GSM375706
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | without 4-OHT treatment
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375706/suppl/GSM375706.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375706/suppl/GSM375706.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375718 | GPL96 |
|
RD_with_PAX3-FKHR-ER_without_4-OHT_rep3
|
RD cell line transduced with PAX3-FKHR-ER without 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with PAX3-FKHR joined to the modified estrogen receptor ligand binding domain
|
| Sample_geo_accession | GSM375718
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | without 4-OHT treatment
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375718/suppl/GSM375718.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375718/suppl/GSM375718.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375729 | GPL96 |
|
RD_with_PAX3-FKHR-ER_with_30nM4-OHT_rep1
|
RD cell line transduced with PAX3-FKHR-ER with 30nM 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with PAX3-FKHR joined to the modified estrogen receptor ligand binding domain
|
| Sample_geo_accession | GSM375729
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | with 30nM 4-OHT treatment for 24 hours
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375729/suppl/GSM375729.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375729/suppl/GSM375729.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375730 | GPL96 |
|
RD_with_PAX3-FKHR-ER_with_30nM4-OHT_rep2
|
RD cell line transduced with PAX3-FKHR-ER with 30nM 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with PAX3-FKHR joined to the modified estrogen receptor ligand binding domain
|
| Sample_geo_accession | GSM375730
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | with 30nM 4-OHT treatment for 24 hours
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375730/suppl/GSM375730.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375730/suppl/GSM375730.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375731 | GPL96 |
|
RD_with_PAX3-FKHR-ER_with_30nM4-OHT_rep3
|
RD cell line transduced with PAX3-FKHR-ER with 30nM 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with PAX3-FKHR joined to the modified estrogen receptor ligand binding domain
|
| Sample_geo_accession | GSM375731
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | with 30nM 4-OHT treatment for 24 hours
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375731/suppl/GSM375731.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375731/suppl/GSM375731.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375732 | GPL96 |
|
RD_with_pK1_without_4-OHT_rep1
|
RD cell line transduced with pK1 vector without 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with pK1 vector
|
| Sample_geo_accession | GSM375732
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | without 4-OHT treatment
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375732/suppl/GSM375732.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375732/suppl/GSM375732.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375733 | GPL96 |
|
RD_with_pK1_without_4-OHT_rep2
|
RD cell line transduced with pK1 without 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with pK1 vector
|
| Sample_geo_accession | GSM375733
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | without 4-OHT treatment
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375733/suppl/GSM375733.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375733/suppl/GSM375733.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375734 | GPL96 |
|
RD_with_pK1_without_4-OHT_rep3
|
RD cell line transduced with pK1 without 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with pK1 vector
|
| Sample_geo_accession | GSM375734
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | without 4-OHT treatment
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375734/suppl/GSM375734.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375734/suppl/GSM375734.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375735 | GPL96 |
|
RD_with_pK1_with_30nM4-OHT_rep1
|
RD cell line transduced with pK1 vector with 30nM 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with pK1 vector
|
| Sample_geo_accession | GSM375735
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | with 30nM 4-OHT treatment for 24 hours
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375735/suppl/GSM375735.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375735/suppl/GSM375735.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375736 | GPL96 |
|
RD_with_pK1_with_30nM4-OHT_rep2
|
RD cell line transduced with pK1 vector with 30nM 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with pK1 vector
|
| Sample_geo_accession | GSM375736
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | with 30nM 4-OHT treatment for 24 hours
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375736/suppl/GSM375736.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375736/suppl/GSM375736.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
GSM375737 | GPL96 |
|
RD_with_pK1_with_30nM4-OHT_rep3
|
RD cell line transduced with pK1 vector with 30nM 4-hydroxy-tamoxifen (4-OHT)
|
cell line: Embryonal Rhabdomyosarcoma
|
Embryonal Rhabdomyosarcoma cell line transduced with pK1 vector
|
| Sample_geo_accession | GSM375737
| | Sample_status | Public on Mar 10 2009
| | Sample_submission_date | Feb 27 2009
| | Sample_last_update_date | Mar 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | cell line stock in the lab
| | Sample_treatment_protocol_ch1 | with 30nM 4-OHT treatment for 24 hours
| | Sample_growth_protocol_ch1 | DMEM with 10% FBS and 1% antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini Kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_hyb_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility
| | Sample_scan_protocol | Standard protocol for Affymetrix GeneChip Human Genome U133A array performed in the Penn Microarray Facility using the Affymetrix GCS 2500 Scanner
| | Sample_data_processing | The scanned .CEL files were analyzed using Affymetrix GCOS software. The .CHP files were generated using the MAS5 algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frederic ,,Barr
| | Sample_contact_email | barrfg@mail.med.upenn.edu
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 422 Curie Blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375737/suppl/GSM375737.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM375nnn/GSM375737/suppl/GSM375737.CHP.gz
| | Sample_series_id | GSE15103
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
