Search results for the GEO ID: GSE15118 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM377872 | GPL339 |
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The CH10T1/2 cell line transfected with the R150C variant PTHR1 treated with PTHrP
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The CH10T1/2 cell line transfected with the R150C variant PTHR1 treated for one hour with PTHrP
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cell line: CH10T1/2 fibroblast cell line
agent: tranfected with the R150C variant PTHR1 treated for one hour with PTHrP
|
The CH10T1/2 cell line was stably transfected with either the R150C variant PTHR1 present in enchondromas (Hopyan, S., Gokgoz, N., Poon, R., Gensure, R. C., Yu, C., Cole, W. G., Bell, R. S., Juppner, H., Andrulis, I. L., Wunder, J. S., and Alman, B. A. (2002). A mutant PTH/PTHrP type I receptor in enchondromatosis. Nat Genet 30, 306-310) or a wild type PTHR1, as previously reported (Mau, E., Whetstone, H., Yu, C., Hopyan, S., Wunder, J. S., and Alman, B. A. (2007). PTHrP regulates growth plate chondrocyte differentiation and proliferation in a Gli3 dependent manner utilizing hedgehog ligand dependent and independent mechanisms. Dev Biol 305, 28-39). Cells were grown overnight in serum free media and treated with either 10− 7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA), or carrier alone for one hour. RNA was isolated from the cells CH10T1/2 cells expressing either the R150C variant PTHR1 or wild type PTHR1. RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer, which was then transcribed to biotinylated complementary RNA (cRNA) by incorporating biotin-CTP and biotin-UTP using Enzo BioArray High Yield RNA labeling kit (Enzo Diagnostics, New York, NY). The cRNA labeling and hybridizations were then performed according to Affymetrix GeneChip Protocol (Affymetrix Inc., Santa Clara, CA). The chips were scanned for fluorescence signal detection. Affymetrix - GeneChip® Mouse Genome 430A 2.0 Array was utilized. This data is from cells expressing the mutant PTHR1 treated with PTHrP.
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Sample_geo_accession | GSM377872
| Sample_status | Public on Mar 06 2009
| Sample_submission_date | Mar 04 2009
| Sample_last_update_date | Mar 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | Cells were grown overnight in serum free media and treated with 10− 7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA) for one hour. RNA was isolated from the cells cells
| Sample_growth_protocol_ch1 | Cells were grown overnight in serum free media and treated with either 10-7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA), or carrier alone for one hour.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Trisol as per the manufacturer's instructions. RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer, which was then transcribed to biotinylated complementary RNA (cRNA) by incorporating biotin-CTP and biotin-UTP using Enzo BioArray High Yield RNA labeling kit (Enzo Diagnostics, New York, NY).
| Sample_hyb_protocol | The cRNA labeling and hybridizations were then performed according to Affymetrix GeneChip Protocol (Affymetrix Inc., Santa Clara, CA).
| Sample_scan_protocol | The chips were scanned for fluorescence signal detection. Affymetrix - GeneChip® Mouse Genome 430A 2.0 Array was utilized.
| Sample_data_processing | Expression console software (Affymetrix)
| Sample_platform_id | GPL339
| Sample_contact_name | benjamin,,alman
| Sample_contact_email | benjamin.alman@sickkids.ca
| Sample_contact_department | Developmental and stem cell biology
| Sample_contact_institute | Hospital for Sick Children
| Sample_contact_address | 555 university avenue
| Sample_contact_city | toronto
| Sample_contact_state | ontario
| Sample_contact_zip/postal_code | m5g1x8
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377872/suppl/GSM377872.CEL.gz
| Sample_series_id | GSE15118
| Sample_data_row_count | 22690
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GSM377873 | GPL339 |
|
The CH10T1/2 cell line transfected with the R150C variant PTHR1 treated with carrier
|
The CH10T1/2 cell line transfected with the R150C variant PTHR1 treated with carrier
|
cell line: CH10T1/2 fibroblast cell line
agent: tranfected with the R150C variant PTHR1 treated with carrier
|
The CH10T1/2 cell line was stably transfected with either the R150C variant PTHR1 present in enchondromas (Hopyan, S., Gokgoz, N., Poon, R., Gensure, R. C., Yu, C., Cole, W. G., Bell, R. S., Juppner, H., Andrulis, I. L., Wunder, J. S., and Alman, B. A. (2002). A mutant PTH/PTHrP type I receptor in enchondromatosis. Nat Genet 30, 306-310) or a wild type PTHR1, as previously reported (Mau, E., Whetstone, H., Yu, C., Hopyan, S., Wunder, J. S., and Alman, B. A. (2007). PTHrP regulates growth plate chondrocyte differentiation and proliferation in a Gli3 dependent manner utilizing hedgehog ligand dependent and independent mechanisms. Dev Biol 305, 28-39). Cells were grown overnight in serum free media and treated with either 10− 7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA), or carrier alone for one hour. RNA was isolated from the cells CH10T1/2 cells expressing either the R150C variant PTHR1 or wild type PTHR1. RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer, which was then transcribed to biotinylated complementary RNA (cRNA) by incorporating biotin-CTP and biotin-UTP using Enzo BioArray High Yield RNA labeling kit (Enzo Diagnostics, New York, NY). The cRNA labeling and hybridizations were then performed according to Affymetrix GeneChip Protocol (Affymetrix Inc., Santa Clara, CA). The chips were scanned for fluorescence signal detection. Affymetrix - GeneChip® Mouse Genome 430A 2.0 Array was utilized. This data is from control cells expressing the mutant PTHR1.
|
Sample_geo_accession | GSM377873
| Sample_status | Public on Mar 06 2009
| Sample_submission_date | Mar 04 2009
| Sample_last_update_date | Mar 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | Cells were grown overnight in serum free media. RNA was isolated from the cells at the same time as cells subjected to one hour of PTHrP treatment
| Sample_growth_protocol_ch1 | Cells were grown overnight in serum free media and treated with either 10-7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA), or carrier alone for one hour.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Trisol as per the manufacturer's instructions. RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer, which was then transcribed to biotinylated complementary RNA (cRNA) by incorporating biotin-CTP and biotin-UTP using Enzo BioArray High Yield RNA labeling kit (Enzo Diagnostics, New York, NY).
| Sample_hyb_protocol | The cRNA labeling and hybridizations were then performed according to Affymetrix GeneChip Protocol (Affymetrix Inc., Santa Clara, CA).
| Sample_scan_protocol | The chips were scanned for fluorescence signal detection. Affymetrix - GeneChip® Mouse Genome 430A 2.0 Array was utilized.
| Sample_data_processing | Expression console software (Affymetrix)
| Sample_platform_id | GPL339
| Sample_contact_name | benjamin,,alman
| Sample_contact_email | benjamin.alman@sickkids.ca
| Sample_contact_department | Developmental and stem cell biology
| Sample_contact_institute | Hospital for Sick Children
| Sample_contact_address | 555 university avenue
| Sample_contact_city | toronto
| Sample_contact_state | ontario
| Sample_contact_zip/postal_code | m5g1x8
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377873/suppl/GSM377873.CEL.gz
| Sample_series_id | GSE15118
| Sample_data_row_count | 22690
| |
|
GSM377874 | GPL339 |
|
The CH10T1/2 cell line transfected with the wild type PTHR1
|
The CH10T1/2 cell line transfected with the wild type PTHR1
|
cell line: CH10T1/2 fibroblast cell line
agent: tranfected with the wild type PTHR1
|
The CH10T1/2 cell line was stably transfected with either the R150C variant PTHR1 present in enchondromas (Hopyan, S., Gokgoz, N., Poon, R., Gensure, R. C., Yu, C., Cole, W. G., Bell, R. S., Juppner, H., Andrulis, I. L., Wunder, J. S., and Alman, B. A. (2002). A mutant PTH/PTHrP type I receptor in enchondromatosis. Nat Genet 30, 306-310) or a wild type PTHR1, as previously reported (Mau, E., Whetstone, H., Yu, C., Hopyan, S., Wunder, J. S., and Alman, B. A. (2007). PTHrP regulates growth plate chondrocyte differentiation and proliferation in a Gli3 dependent manner utilizing hedgehog ligand dependent and independent mechanisms. Dev Biol 305, 28-39). Cells were grown overnight in serum free media and treated with either 10− 7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA), or carrier alone for one hour. RNA was isolated from the cells CH10T1/2 cells expressing either the R150C variant PTHR1 or wild type PTHR1. RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer, which was then transcribed to biotinylated complementary RNA (cRNA) by incorporating biotin-CTP and biotin-UTP using Enzo BioArray High Yield RNA labeling kit (Enzo Diagnostics, New York, NY). The cRNA labeling and hybridizations were then performed according to Affymetrix GeneChip Protocol (Affymetrix Inc., Santa Clara, CA). The chips were scanned for fluorescence signal detection. Affymetrix - GeneChip® Mouse Genome 430A 2.0 Array was utilized. This data is from control cells expressing the wild type PTHR1.
|
Sample_geo_accession | GSM377874
| Sample_status | Public on Mar 06 2009
| Sample_submission_date | Mar 04 2009
| Sample_last_update_date | Mar 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | Cells were grown overnight in serum free media. RNA was isolated from the cells at the same time as cells subjected to one hour of PTHrP treatment
| Sample_growth_protocol_ch1 | Cells were grown overnight in serum free media and treated with either 10-7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA), or carrier alone for one hour.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Trisol as per the manufacturer's instructions. RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer, which was then transcribed to biotinylated complementary RNA (cRNA) by incorporating biotin-CTP and biotin-UTP using Enzo BioArray High Yield RNA labeling kit (Enzo Diagnostics, New York, NY).
| Sample_hyb_protocol | The cRNA labeling and hybridizations were then performed according to Affymetrix GeneChip Protocol (Affymetrix Inc., Santa Clara, CA).
| Sample_scan_protocol | The chips were scanned for fluorescence signal detection. Affymetrix - GeneChip® Mouse Genome 430A 2.0 Array was utilized.
| Sample_data_processing | Expression console software (Affymetrix)
| Sample_platform_id | GPL339
| Sample_contact_name | benjamin,,alman
| Sample_contact_email | benjamin.alman@sickkids.ca
| Sample_contact_department | Developmental and stem cell biology
| Sample_contact_institute | Hospital for Sick Children
| Sample_contact_address | 555 university avenue
| Sample_contact_city | toronto
| Sample_contact_state | ontario
| Sample_contact_zip/postal_code | m5g1x8
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377874/suppl/GSM377874.CEL.gz
| Sample_series_id | GSE15118
| Sample_data_row_count | 22690
| |
|
GSM377875 | GPL339 |
|
The CH10T1/2 cell line transfected with the wild type PTHR1 treated with PTHrP
|
The CH10T1/2 cell line transfected with the wild type PTHR1 treated with PTHrP
|
cell line: CH10T1/2 fibroblast cell line
agent: tranfected with wild type PTHR1 treated with PTHrP
|
The CH10T1/2 cell line was stably transfected with either the R150C variant PTHR1 present in enchondromas (Hopyan, S., Gokgoz, N., Poon, R., Gensure, R. C., Yu, C., Cole, W. G., Bell, R. S., Juppner, H., Andrulis, I. L., Wunder, J. S., and Alman, B. A. (2002). A mutant PTH/PTHrP type I receptor in enchondromatosis. Nat Genet 30, 306-310) or a wild type PTHR1, as previously reported (Mau, E., Whetstone, H., Yu, C., Hopyan, S., Wunder, J. S., and Alman, B. A. (2007). PTHrP regulates growth plate chondrocyte differentiation and proliferation in a Gli3 dependent manner utilizing hedgehog ligand dependent and independent mechanisms. Dev Biol 305, 28-39). Cells were grown overnight in serum free media and treated with either 10− 7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA), or carrier alone for one hour. RNA was isolated from the cells CH10T1/2 cells expressing either the R150C variant PTHR1 or wild type PTHR1. RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer, which was then transcribed to biotinylated complementary RNA (cRNA) by incorporating biotin-CTP and biotin-UTP using Enzo BioArray High Yield RNA labeling kit (Enzo Diagnostics, New York, NY). The cRNA labeling and hybridizations were then performed according to Affymetrix GeneChip Protocol (Affymetrix Inc., Santa Clara, CA). The chips were scanned for fluorescence signal detection. Affymetrix - GeneChip® Mouse Genome 430A 2.0 Array was utilized. This data is from cells expressing the wild type PTHR1 treated with PTHrP.
|
Sample_geo_accession | GSM377875
| Sample_status | Public on Mar 06 2009
| Sample_submission_date | Mar 04 2009
| Sample_last_update_date | Mar 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | Cells were grown overnight in serum free media. Cells were then treated treated with 10− 7 M PTHrP for one hour. RNA was then isolated from the cells.
| Sample_growth_protocol_ch1 | Cells were grown overnight in serum free media and treated with either 10-7 M PTHrP (Bachem, King of Prussia, Pennsylvania, USA), or carrier alone for one hour.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Trisol as per the manufacturer's instructions. RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was converted to double-stranded cDNA using Superscript (Gibco-Invitrogen) with a T7-(dT)24 primer, which was then transcribed to biotinylated complementary RNA (cRNA) by incorporating biotin-CTP and biotin-UTP using Enzo BioArray High Yield RNA labeling kit (Enzo Diagnostics, New York, NY).
| Sample_hyb_protocol | The cRNA labeling and hybridizations were then performed according to Affymetrix GeneChip Protocol (Affymetrix Inc., Santa Clara, CA).
| Sample_scan_protocol | The chips were scanned for fluorescence signal detection. Affymetrix - GeneChip® Mouse Genome 430A 2.0 Array was utilized.
| Sample_data_processing | Expression console software (Affymetrix)
| Sample_platform_id | GPL339
| Sample_contact_name | benjamin,,alman
| Sample_contact_email | benjamin.alman@sickkids.ca
| Sample_contact_department | Developmental and stem cell biology
| Sample_contact_institute | Hospital for Sick Children
| Sample_contact_address | 555 university avenue
| Sample_contact_city | toronto
| Sample_contact_state | ontario
| Sample_contact_zip/postal_code | m5g1x8
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377875/suppl/GSM377875.CEL.gz
| Sample_series_id | GSE15118
| Sample_data_row_count | 22690
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