Search results for the GEO ID: GSE15121  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM377904 | GPL1261 |
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E10-miR-129, biological rep1
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E10 cells with high expression of miR-129
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cell line: E10
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Gene expression data from E10 cell infected with miR-129 over-expressing lentivirus
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| Sample_geo_accession | GSM377904
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Mar 05 2009
| | Sample_last_update_date | Sep 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infections were performed when cells reached 80%–90% confluency.
| | Sample_growth_protocol_ch1 | Murine non-transformed lung epithelial cells (E10) were grown in DMEM with 10% FBS and antibiotics in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | jining ,,lu
| | Sample_contact_email | jining@bu.edu
| | Sample_contact_phone | 617-638-6180
| | Sample_contact_fax | 617-536-8093
| | Sample_contact_institute | Boston University
| | Sample_contact_address | 715 Albany street R304
| | Sample_contact_city | BoSTON
| | Sample_contact_zip/postal_code | 02118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377904/suppl/GSM377904.CEL.gz
| | Sample_series_id | GSE15121
| | Sample_data_row_count | 45101
| | |
|
GSM377905 | GPL1261 |
|
E10-miR-129, biological rep2
|
E10 cells with high expression of miR-129
|
cell line: E10
|
Gene expression data from E10 cell infected with miR-129 over-expressing lentivirus
|
| Sample_geo_accession | GSM377905
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Mar 05 2009
| | Sample_last_update_date | Sep 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infections were performed when cells reached 80%–90% confluency.
| | Sample_growth_protocol_ch1 | Murine non-transformed lung epithelial cells (E10) were grown in DMEM with 10% FBS and antibiotics in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | jining ,,lu
| | Sample_contact_email | jining@bu.edu
| | Sample_contact_phone | 617-638-6180
| | Sample_contact_fax | 617-536-8093
| | Sample_contact_institute | Boston University
| | Sample_contact_address | 715 Albany street R304
| | Sample_contact_city | BoSTON
| | Sample_contact_zip/postal_code | 02118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377905/suppl/GSM377905.CEL.gz
| | Sample_series_id | GSE15121
| | Sample_data_row_count | 45101
| | |
|
GSM377906 | GPL1261 |
|
E10-miR-129, biological rep3
|
E10 cells with high expression of miR-129
|
cell line: E10
|
Gene expression data from E10 cell infected with miR-129 over-expressing lentivirus
|
| Sample_geo_accession | GSM377906
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Mar 05 2009
| | Sample_last_update_date | Sep 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infections were performed when cells reached 80%–90% confluency.
| | Sample_growth_protocol_ch1 | Murine non-transformed lung epithelial cells (E10) were grown in DMEM with 10% FBS and antibiotics in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | jining ,,lu
| | Sample_contact_email | jining@bu.edu
| | Sample_contact_phone | 617-638-6180
| | Sample_contact_fax | 617-536-8093
| | Sample_contact_institute | Boston University
| | Sample_contact_address | 715 Albany street R304
| | Sample_contact_city | BoSTON
| | Sample_contact_zip/postal_code | 02118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377906/suppl/GSM377906.CEL.gz
| | Sample_series_id | GSE15121
| | Sample_data_row_count | 45101
| | |
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GSM377907 | GPL1261 |
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E10-Gfp, biological rep1
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E10 cells with control lentivirus
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cell line: E10
|
Gene expression data fromE10 cell with control lentivirus
|
| Sample_geo_accession | GSM377907
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Mar 05 2009
| | Sample_last_update_date | Sep 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infections were performed when cells reached 80%–90% confluency.
| | Sample_growth_protocol_ch1 | Murine non-transformed lung epithelial cells (E10) were grown in DMEM with 10% FBS and antibiotics in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | jining ,,lu
| | Sample_contact_email | jining@bu.edu
| | Sample_contact_phone | 617-638-6180
| | Sample_contact_fax | 617-536-8093
| | Sample_contact_institute | Boston University
| | Sample_contact_address | 715 Albany street R304
| | Sample_contact_city | BoSTON
| | Sample_contact_zip/postal_code | 02118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377907/suppl/GSM377907.CEL.gz
| | Sample_series_id | GSE15121
| | Sample_data_row_count | 45101
| | |
|
GSM377908 | GPL1261 |
|
E10-Gfp, biological rep2
|
E10 cells with control lentivirus
|
cell line: E10
|
Gene expression data fromE10 cell with control lentivirus
|
| Sample_geo_accession | GSM377908
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Mar 05 2009
| | Sample_last_update_date | Sep 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infections were performed when cells reached 80%–90% confluency.
| | Sample_growth_protocol_ch1 | Murine non-transformed lung epithelial cells (E10) were grown in DMEM with 10% FBS and antibiotics in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | jining ,,lu
| | Sample_contact_email | jining@bu.edu
| | Sample_contact_phone | 617-638-6180
| | Sample_contact_fax | 617-536-8093
| | Sample_contact_institute | Boston University
| | Sample_contact_address | 715 Albany street R304
| | Sample_contact_city | BoSTON
| | Sample_contact_zip/postal_code | 02118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377908/suppl/GSM377908.CEL.gz
| | Sample_series_id | GSE15121
| | Sample_data_row_count | 45101
| | |
|
GSM377909 | GPL1261 |
|
E10-Gfp, biological rep3
|
E10 cells with control lentivirus
|
cell line: E10
|
Gene expression data fromE10 cell with control lentivirus
|
| Sample_geo_accession | GSM377909
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Mar 05 2009
| | Sample_last_update_date | Sep 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infections were performed when cells reached 80%–90% confluency.
| | Sample_growth_protocol_ch1 | Murine non-transformed lung epithelial cells (E10) were grown in DMEM with 10% FBS and antibiotics in 6 well plates.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | jining ,,lu
| | Sample_contact_email | jining@bu.edu
| | Sample_contact_phone | 617-638-6180
| | Sample_contact_fax | 617-536-8093
| | Sample_contact_institute | Boston University
| | Sample_contact_address | 715 Albany street R304
| | Sample_contact_city | BoSTON
| | Sample_contact_zip/postal_code | 02118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM377nnn/GSM377909/suppl/GSM377909.CEL.gz
| | Sample_series_id | GSE15121
| | Sample_data_row_count | 45101
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