Search results for the GEO ID: GSE15162  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM378688 | GPL570 |
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HepG2 cells control 2h
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HepG2 human hepatocellular carcinoma cell line
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cell line: HepG2
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This sample was part of a time course experiment of the effect of quercetin on HepG2 cells gene axpression
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| Sample_geo_accession | GSM378688
| | Sample_status | Public on Mar 11 2009
| | Sample_submission_date | Mar 09 2009
| | Sample_last_update_date | Mar 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HepG2 cell cultures were incubated with serum free medioum for 2 hours after overnight serum starvation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using NucleospinII columns (Macheray-Nagel, Dttren, Germany), according to the manufacturer’s instructions.
| | Sample_label_ch1 | RNA was labeled according to the Affymetrix protocol
| | Sample_label_protocol_ch1 | RNA was labeled according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France.
| | Sample_hyb_protocol | Hybridization was perfoermed according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France
| | Sample_scan_protocol | Signals were detected by an Affymetrix microarray chip reader.
| | Sample_data_processing | RMA normalization was performed with the raw data using Genespring GX V9.0 (Agilent, Foster City, CA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,,Notas
| | Sample_contact_email | gnotas@med.uoc.gr
| | Sample_contact_laboratory | Experimental Endocrinology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Crete
| | Sample_contact_address | PO BOX 2208
| | Sample_contact_city | Heraklion
| | Sample_contact_zip/postal_code | 71003
| | Sample_contact_country | Greece
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378688/suppl/GSM378688.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378688/suppl/GSM378688.chp.gz
| | Sample_series_id | GSE15162
| | Sample_data_row_count | 54675
| | |
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GSM378689 | GPL570 |
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HepG2 cells quercetin 2h
|
HepG2 human hepatocellular carcinoma cell line
|
cell line: HepG2
|
This sample was part of a time course experiment of the effect of quercetin on HepG2 cells gene axpression
|
| Sample_geo_accession | GSM378689
| | Sample_status | Public on Mar 11 2009
| | Sample_submission_date | Mar 09 2009
| | Sample_last_update_date | Mar 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HepG2 cell cultures were incubated with quercetin (3μM) for 2 hours after overnight serum starvation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using NucleospinII columns (Macheray-Nagel, Dttren, Germany), according to the manufacturer’s instructions.
| | Sample_label_ch1 | RNA was labeled according to the Affymetrix protocol
| | Sample_label_protocol_ch1 | RNA was labeled according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France.
| | Sample_hyb_protocol | Hybridization was perfoermed according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France
| | Sample_scan_protocol | Signals were detected by an Affymetrix microarray chip reader.
| | Sample_data_processing | RMA normalization was performed with the raw data using Genespring GX V9.0 (Agilent, Foster City, CA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,,Notas
| | Sample_contact_email | gnotas@med.uoc.gr
| | Sample_contact_laboratory | Experimental Endocrinology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Crete
| | Sample_contact_address | PO BOX 2208
| | Sample_contact_city | Heraklion
| | Sample_contact_zip/postal_code | 71003
| | Sample_contact_country | Greece
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378689/suppl/GSM378689.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378689/suppl/GSM378689.chp.gz
| | Sample_series_id | GSE15162
| | Sample_data_row_count | 54675
| | |
|
GSM378690 | GPL570 |
|
HepG2 cells control 4h
|
HepG2 human hepatocellular carcinoma cell line
|
cell line: HepG2
|
This sample was part of a time course experiment of the effect of quercetin on HepG2 cells gene axpression
|
| Sample_geo_accession | GSM378690
| | Sample_status | Public on Mar 11 2009
| | Sample_submission_date | Mar 09 2009
| | Sample_last_update_date | Mar 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HepG2 cell cultures were incubated with serum free medium for 4 hours after overnight serum starvation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using NucleospinII columns (Macheray-Nagel, Dttren, Germany), according to the manufacturer’s instructions.
| | Sample_label_ch1 | RNA was labeled according to the Affymetrix protocol
| | Sample_label_protocol_ch1 | RNA was labeled according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France.
| | Sample_hyb_protocol | Hybridization was perfoermed according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France
| | Sample_scan_protocol | Signals were detected by an Affymetrix microarray chip reader.
| | Sample_data_processing | RMA normalization was performed with the raw data using Genespring GX V9.0 (Agilent, Foster City, CA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,,Notas
| | Sample_contact_email | gnotas@med.uoc.gr
| | Sample_contact_laboratory | Experimental Endocrinology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Crete
| | Sample_contact_address | PO BOX 2208
| | Sample_contact_city | Heraklion
| | Sample_contact_zip/postal_code | 71003
| | Sample_contact_country | Greece
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378690/suppl/GSM378690.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378690/suppl/GSM378690.chp.gz
| | Sample_series_id | GSE15162
| | Sample_data_row_count | 54675
| | |
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GSM378691 | GPL570 |
|
HepG2 cells quercetin 4h
|
HepG2 human hepatocellular carcinoma cell line
|
cell line: HepG2
|
This sample was part of a time course experiment of the effect of quercetin on HepG2 cells gene axpression
|
| Sample_geo_accession | GSM378691
| | Sample_status | Public on Mar 11 2009
| | Sample_submission_date | Mar 09 2009
| | Sample_last_update_date | Mar 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HepG2 cell cultures were incubated with quercetin (3μM) for 4 hours after overnight serum starvation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using NucleospinII columns (Macheray-Nagel, Dttren, Germany), according to the manufacturer’s instructions.
| | Sample_label_ch1 | RNA was labeled according to the Affymetrix protocol
| | Sample_label_protocol_ch1 | RNA was labeled according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France.
| | Sample_hyb_protocol | Hybridization was perfoermed according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France
| | Sample_scan_protocol | Signals were detected by an Affymetrix microarray chip reader.
| | Sample_data_processing | RMA normalization was performed with the raw data using Genespring GX V9.0 (Agilent, Foster City, CA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,,Notas
| | Sample_contact_email | gnotas@med.uoc.gr
| | Sample_contact_laboratory | Experimental Endocrinology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Crete
| | Sample_contact_address | PO BOX 2208
| | Sample_contact_city | Heraklion
| | Sample_contact_zip/postal_code | 71003
| | Sample_contact_country | Greece
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378691/suppl/GSM378691.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378691/suppl/GSM378691.chp.gz
| | Sample_series_id | GSE15162
| | Sample_data_row_count | 54675
| | |
|
GSM378692 | GPL570 |
|
HepG2 cells control 12h
|
HepG2 human hepatocellular carcinoma cell line
|
cell line: HepG2
|
This sample was part of a time course experiment of the effect of quercetin on HepG2 cells gene axpression
|
| Sample_geo_accession | GSM378692
| | Sample_status | Public on Mar 11 2009
| | Sample_submission_date | Mar 09 2009
| | Sample_last_update_date | Mar 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HepG2 cell cultures were incubated with serum free medium for 12 hours after overnight serum starvation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using NucleospinII columns (Macheray-Nagel, Dttren, Germany), according to the manufacturer’s instructions.
| | Sample_label_ch1 | RNA was labeled according to the Affymetrix protocol
| | Sample_label_protocol_ch1 | RNA was labeled according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France.
| | Sample_hyb_protocol | Hybridization was perfoermed according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France
| | Sample_scan_protocol | Signals were detected by an Affymetrix microarray chip reader.
| | Sample_data_processing | RMA normalization was performed with the raw data using Genespring GX V9.0 (Agilent, Foster City, CA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,,Notas
| | Sample_contact_email | gnotas@med.uoc.gr
| | Sample_contact_laboratory | Experimental Endocrinology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Crete
| | Sample_contact_address | PO BOX 2208
| | Sample_contact_city | Heraklion
| | Sample_contact_zip/postal_code | 71003
| | Sample_contact_country | Greece
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378692/suppl/GSM378692.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378692/suppl/GSM378692.chp.gz
| | Sample_series_id | GSE15162
| | Sample_data_row_count | 54675
| | |
|
GSM378693 | GPL570 |
|
HepG2 cells quercetin 12h
|
HepG2 human hepatocellular carcinoma cell line
|
cell line: HepG2
|
This sample was part of a time course experiment of the effect of quercetin on HepG2 cells gene axpression
|
| Sample_geo_accession | GSM378693
| | Sample_status | Public on Mar 11 2009
| | Sample_submission_date | Mar 09 2009
| | Sample_last_update_date | Mar 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HepG2 cell cultures were incubated with quercetin (3μM) for 12 hours after overnight serum starvation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using NucleospinII columns (Macheray-Nagel, Dttren, Germany), according to the manufacturer’s instructions.
| | Sample_label_ch1 | RNA was labeled according to the Affymetrix protocol
| | Sample_label_protocol_ch1 | RNA was labeled according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France.
| | Sample_hyb_protocol | Hybridization was perfoermed according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France
| | Sample_scan_protocol | Signals were detected by an Affymetrix microarray chip reader.
| | Sample_data_processing | RMA normalization was performed with the raw data using Genespring GX V9.0 (Agilent, Foster City, CA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,,Notas
| | Sample_contact_email | gnotas@med.uoc.gr
| | Sample_contact_laboratory | Experimental Endocrinology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Crete
| | Sample_contact_address | PO BOX 2208
| | Sample_contact_city | Heraklion
| | Sample_contact_zip/postal_code | 71003
| | Sample_contact_country | Greece
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378693/suppl/GSM378693.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378693/suppl/GSM378693.chp.gz
| | Sample_series_id | GSE15162
| | Sample_data_row_count | 54675
| | |
|
GSM378694 | GPL570 |
|
HepG2 cells control 24h
|
HepG2 human hepatocellular carcinoma cell line
|
cell line: HepG2
|
This sample was part of a time course experiment of the effect of quercetin on HepG2 cells gene axpression
|
| Sample_geo_accession | GSM378694
| | Sample_status | Public on Mar 11 2009
| | Sample_submission_date | Mar 09 2009
| | Sample_last_update_date | Mar 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HepG2 cell cultures were incubated with serum free medium for 24 hours after overnight serum starvation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using NucleospinII columns (Macheray-Nagel, Dttren, Germany), according to the manufacturer’s instructions.
| | Sample_label_ch1 | RNA was labeled according to the Affymetrix protocol
| | Sample_label_protocol_ch1 | RNA was labeled according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France.
| | Sample_hyb_protocol | Hybridization was perfoermed according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France
| | Sample_scan_protocol | Signals were detected by an Affymetrix microarray chip reader.
| | Sample_data_processing | RMA normalization was performed with the raw data using Genespring GX V9.0 (Agilent, Foster City, CA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,,Notas
| | Sample_contact_email | gnotas@med.uoc.gr
| | Sample_contact_laboratory | Experimental Endocrinology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Crete
| | Sample_contact_address | PO BOX 2208
| | Sample_contact_city | Heraklion
| | Sample_contact_zip/postal_code | 71003
| | Sample_contact_country | Greece
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378694/suppl/GSM378694.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378694/suppl/GSM378694.chp.gz
| | Sample_series_id | GSE15162
| | Sample_data_row_count | 54675
| | |
|
GSM378695 | GPL570 |
|
HepG2 cells quercetin 24h
|
HepG2 human hepatocellular carcinoma cell line
|
cell line: HepG2
|
This sample was part of a time course experiment of the effect of quercetin on HepG2 cells gene axpression
|
| Sample_geo_accession | GSM378695
| | Sample_status | Public on Mar 11 2009
| | Sample_submission_date | Mar 09 2009
| | Sample_last_update_date | Mar 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HepG2 cell cultures were incubated with quercetin (3μM) for 24 hours after overnight serum starvation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using NucleospinII columns (Macheray-Nagel, Dttren, Germany), according to the manufacturer’s instructions.
| | Sample_label_ch1 | RNA was labeled according to the Affymetrix protocol
| | Sample_label_protocol_ch1 | RNA was labeled according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France.
| | Sample_hyb_protocol | Hybridization was perfoermed according to the Affymetrix protocol (Affymetrix Gene-Chip Expression Analysis Technical Manual) by the Laboratoire Transcriptome of CHU Montpellier, France
| | Sample_scan_protocol | Signals were detected by an Affymetrix microarray chip reader.
| | Sample_data_processing | RMA normalization was performed with the raw data using Genespring GX V9.0 (Agilent, Foster City, CA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,,Notas
| | Sample_contact_email | gnotas@med.uoc.gr
| | Sample_contact_laboratory | Experimental Endocrinology
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Crete
| | Sample_contact_address | PO BOX 2208
| | Sample_contact_city | Heraklion
| | Sample_contact_zip/postal_code | 71003
| | Sample_contact_country | Greece
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378695/suppl/GSM378695.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM378nnn/GSM378695/suppl/GSM378695.chp.gz
| | Sample_series_id | GSE15162
| | Sample_data_row_count | 54675
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