Search results for the GEO ID: GSE15209 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM379855 | GPL570 |
|
G166-NS_B
|
Glioblastoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: glioblastoma
|
U133Plus2_122906L_DK01.CEL
|
Sample_geo_accession | GSM379855
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379855/suppl/GSM379855.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379856 | GPL570 |
|
G174-NS
|
Giant cell glioblastoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: glioblastoma
|
U133Plus2_122906L_DK02.CEL
|
Sample_geo_accession | GSM379856
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379856/suppl/GSM379856.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379857 | GPL570 |
|
G179-NS_A
|
Oligoastrocytoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: oligoastrocytoma
|
U133Plus2_122906L_DK03.CEL
|
Sample_geo_accession | GSM379857
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379857/suppl/GSM379857.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379858 | GPL570 |
|
G179-NS_B
|
Oligoastrocytoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: oligoastrocytoma
|
U133Plus2_122906L_DK04.CEL
|
Sample_geo_accession | GSM379858
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379858/suppl/GSM379858.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379859 | GPL570 |
|
Normal Brain #4
|
Non-malignant human cortex sample
|
tissue: brain
condition: Primary biopsy
cell type: non-malignant
cell type: primary tissue
cell type: normal cortex
|
U133Plus2_122906L_DK05.CEL
|
Sample_geo_accession | GSM379859
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379859/suppl/GSM379859.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379860 | GPL570 |
|
NORM#12
|
Non-malignant human cortex sample
|
tissue: brain
condition: Primary biopsy
cell type: non-malignant
cell type: primary tissue
cell type: normal cortex
|
U133Plus2_122906L_DK06.CEL
|
Sample_geo_accession | GSM379860
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379860/suppl/GSM379860.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379861 | GPL570 |
|
NORM#31
|
Non-malignant human cortex sample
|
tissue: brain
condition: Primary biopsy
cell type: non-malignant
cell type: primary tissue
cell type: normal cortex
|
U133Plus2_122906L_DK07.CEL
|
Sample_geo_accession | GSM379861
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379861/suppl/GSM379861.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379862 | GPL570 |
|
Norm Brain#36
|
Non-malignant human cortex sample
|
tissue: brain
condition: Primary biopsy
cell type: non-malignant
cell type: primary tissue
cell type: normal cortex
|
U133Plus2_122906L_DK08.CEL
|
Sample_geo_accession | GSM379862
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379862/suppl/GSM379862.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379863 | GPL570 |
|
NORM#41
|
Non-malignant human cortex sample
|
tissue: brain
condition: Primary biopsy
cell type: non-malignant
cell type: primary tissue
cell type: normal cortex
|
U133Plus2_122906L_DK09.CEL
|
Sample_geo_accession | GSM379863
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379863/suppl/GSM379863.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379864 | GPL570 |
|
Norm Brain#102
|
Non-malignant human cortex sample
|
tissue: brain
condition: Primary biopsy
cell type: non-malignant
cell type: primary tissue
cell type: normal cortex
|
U133Plus2_122906L_DK10.CEL
|
Sample_geo_accession | GSM379864
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379864/suppl/GSM379864.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379865 | GPL570 |
|
hf240-NS-A
|
human foetal cortex derived NS cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: non-malignant
cell type: cell line
cell type: neural stem
|
U133Plus2_122906L_DK11.CEL
|
Sample_geo_accession | GSM379865
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379865/suppl/GSM379865.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379866 | GPL570 |
|
hf240-NS-B
|
human foetal cortex derived NS cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: non-malignant
cell type: cell line
cell type: neural stem
|
U133Plus2_122906L_DK12.CEL
|
Sample_geo_accession | GSM379866
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379866/suppl/GSM379866.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379867 | GPL570 |
|
hf240-NS-C
|
human foetal cortex derived NS cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: non-malignant
cell type: cell line
cell type: neural stem
|
U133Plus2_122906L_DK13.CEL
|
Sample_geo_accession | GSM379867
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379867/suppl/GSM379867.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379868 | GPL570 |
|
hf286-NS
|
human foetal cortex derived NS cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: non-malignant
cell type: cell line
cell type: neural stem
|
U133Plus2_122906L_DK14.CEL
|
Sample_geo_accession | GSM379868
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379868/suppl/GSM379868.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379869 | GPL570 |
|
hf289-NS
|
human foetal cortex derived NS cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: non-malignant
cell type: cell line
cell type: neural stem
|
U133Plus2_122906L_DK15.CEL
|
Sample_geo_accession | GSM379869
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379869/suppl/GSM379869.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379870 | GPL570 |
|
G144-ED (GliNS1)
|
Glioblastoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: glioblastoma
|
U133Plus2_122906L_DK16.CEL
|
Sample_geo_accession | GSM379870
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379870/suppl/GSM379870.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379871 | GPL570 |
|
GliNS2
|
Glioblastoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: glioblastoma
|
U133Plus2_122906L_DK17.CEL
|
Sample_geo_accession | GSM379871
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379871/suppl/GSM379871.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379872 | GPL570 |
|
G144-NS_A
|
Glioblastoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: glioblastoma
|
U133Plus2_122906L_DK18.CEL
|
Sample_geo_accession | GSM379872
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379872/suppl/GSM379872.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379873 | GPL570 |
|
G144-NS_B
|
Glioblastoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: glioblastoma
|
U133Plus2_122906L_DK19.CEL
|
Sample_geo_accession | GSM379873
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379873/suppl/GSM379873.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
GSM379874 | GPL570 |
|
G166-NS_A
|
Glioblastoma derived cell line
|
tissue: brain
condition: Proliferating cultures in EGF and FGF-2
cell type: malignant
cell type: cell line
cell type: glioblastoma
|
U133Plus2_122906L_DK20.CEL
|
Sample_geo_accession | GSM379874
| Sample_status | Public on Mar 13 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Mar 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were grown to near 70-90% confluence, washed using PBS and then treated with Accutase for 5mins to detach cells. Cells were harvested by centrifugation and immediately processed.
| Sample_growth_protocol_ch1 | Cells were grown in standard human foetal NS cell expansion media. As described in detail in the Supplemental Methods of Pollard S., et al. Cell Stem Cell, 2009.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| Sample_hyb_protocol | EukGE-WS2v4
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data was pre-processed using the vsnrma method from the Bioconductor package vsn.
| Sample_platform_id | GPL570
| Sample_contact_name | Steven,Michael,Pollard
| Sample_contact_email | smp54@cam.ac.uk
| Sample_contact_phone | 0044 1223 760281
| Sample_contact_laboratory | Prof Austin Smith
| Sample_contact_department | Centre for Stem Cell Research
| Sample_contact_institute | University of Cambridge
| Sample_contact_address | Tennis Court Road
| Sample_contact_city | Cambridge
| Sample_contact_state | Cambs
| Sample_contact_zip/postal_code | CB2 1QR
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM379nnn/GSM379874/suppl/GSM379874.CEL.gz
| Sample_series_id | GSE15209
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|