Search results for the GEO ID: GSE15214 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM380009 | GPL570 |
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mutant MSCs from root
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Human dental root from an OFCD patient
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tissue: Root apical papilla
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Gene expression data from mutant cells
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Sample_geo_accession | GSM380009
| Sample_status | Public on Jul 23 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Jul 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were grown in a humidified 5% CO2 incubator in DMEM alpha modified Eagle's medium supplemented with 15% fetal bovine serum
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Rneasy Kit extraction of total RNA was performed according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G .
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Cun-Yu,,Wang
| Sample_contact_email | cwang@dentistry.ucla.edu
| Sample_contact_phone | 310-825-4415
| Sample_contact_fax | 310-794-7109
| Sample_contact_institute | UCLA
| Sample_contact_address | 10833 Le Conte
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380009/suppl/GSM380009.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380009/suppl/GSM380009.CHP.gz
| Sample_series_id | GSE15214
| Sample_data_row_count | 54675
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GSM380010 | GPL570 |
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wild type MSCs from Root
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Human dental root from normal subject
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tissue: Root apical papilla
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Gene expression data from wild type cells
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Sample_geo_accession | GSM380010
| Sample_status | Public on Jul 23 2009
| Sample_submission_date | Mar 12 2009
| Sample_last_update_date | Jul 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Cells were grown in a humidified 5% CO2 incubator in DMEM alpha modified Eagle's medium supplemented with 15% fetal bovine serum
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Rneasy Kit extraction of total RNA was performed according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G .
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Cun-Yu,,Wang
| Sample_contact_email | cwang@dentistry.ucla.edu
| Sample_contact_phone | 310-825-4415
| Sample_contact_fax | 310-794-7109
| Sample_contact_institute | UCLA
| Sample_contact_address | 10833 Le Conte
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380010/suppl/GSM380010.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380010/suppl/GSM380010.CHP.gz
| Sample_relation | Reanalyzed by: GSE20125
| Sample_series_id | GSE15214
| Sample_data_row_count | 54675
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