Search results for the GEO ID: GSE15218  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM380013 | GPL201 |
|
Lan5_s100b_0.5nM_rep1
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
treated cells lan5 s100b 0.5nM
|
| Sample_geo_accession | GSM380013
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | s100b 0.5nM
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380013/suppl/GSM380013.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380013/suppl/GSM380013.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
|
GSM380014 | GPL201 |
|
Lan5_s100b_0.5nM_rep2
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
treated cells lan5 s100b 0.5nM
|
| Sample_geo_accession | GSM380014
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | s100b 0.5nM
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380014/suppl/GSM380014.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380014/suppl/GSM380014.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
|
GSM380015 | GPL201 |
|
Lan5_s100b_0.5nM_rep3
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
treated cells lan5 s100b 0.5nM
|
| Sample_geo_accession | GSM380015
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | s100b 0.5nM
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380015/suppl/GSM380015.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380015/suppl/GSM380015.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
|
GSM380016 | GPL201 |
|
Lan5_s100b_5uM_rep1
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
treated cells lan5 s100b 5uM
|
| Sample_geo_accession | GSM380016
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | s100b 5uM
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380016/suppl/GSM380016.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380016/suppl/GSM380016.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
|
GSM380017 | GPL201 |
|
Lan5_s100b_5uM_rep2
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
treated cells lan5 s100b 5uM
|
| Sample_geo_accession | GSM380017
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | s100b 5uM
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380017/suppl/GSM380017.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380017/suppl/GSM380017.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
|
GSM380018 | GPL201 |
|
Lan5_s100b_5uM_rep3
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
treated cells lan5 s100b 5uM
|
| Sample_geo_accession | GSM380018
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | s100b 5uM
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380018/suppl/GSM380018.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380018/suppl/GSM380018.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
|
GSM380022 | GPL201 |
|
Untreated cells lan5_rep1
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
untreated cells lan5
|
| Sample_geo_accession | GSM380022
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment (cells treated with cell culture medium alone)
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380022/suppl/GSM380022.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380022/suppl/GSM380022.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
|
GSM380023 | GPL201 |
|
Untreated cells lan5_rep2
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
untreated cells lan5
|
| Sample_geo_accession | GSM380023
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment (cells treated with cell culture medium alone)
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380023/suppl/GSM380023.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380023/suppl/GSM380023.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
|
GSM380024 | GPL201 |
|
Untreated cells Lan5_rep3
|
Lan5 commercial cell line
|
cell line: Lan5
cell type: neuroblastoma
|
untreated cells lan5
|
| Sample_geo_accession | GSM380024
| | Sample_status | Public on May 31 2010
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment (cells treated with cell culture medium alone)
| | Sample_growth_protocol_ch1 | cells were cultured in complete DMEM till 80% confluence, then placed at 60000 cells per squared cm
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy mini kit extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-Focus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Raw data have been normalized using gc-RMA methods
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380024/suppl/GSM380024.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380024/suppl/GSM380024.CHP.gz
| | Sample_series_id | GSE15218
| | Sample_data_row_count | 8793
| | |
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