Search results for the GEO ID: GSE15220  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM380012 | GPL570 |
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Testicular_cancer_cell_line_rep_1
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Cultured testicular cancer cell line (Ntera2)
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gender: Male
age: 22
tissue: testis
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Expression data was coupled with the differential methylation analysis by tiling arrays.
|
| Sample_geo_accession | GSM380012
| | Sample_status | Public on Mar 18 2009
| | Sample_submission_date | Mar 12 2009
| | Sample_last_update_date | Mar 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 90% confluent cells using Trizol Reagent. RNA was precipitated by isopropanol and resuspended in DEPC water. Total RNA was treated by DNaseI and purified by PureLink RNA Mini Kit (Invitrogen). RNA integrity and concentration was detected by BioAnalyzer (Agilent).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using GeneChip 3' IVT Expression Kit (Affymetrix) according to Affymetrix's protocol
| | Sample_hyb_protocol | Standard Affymetrix Hybridization protocol
| | Sample_scan_protocol | Arrays were scanned with GeneChip Scanner GCS3000 (7G)
| | Sample_data_processing | Triplicate sets of hybridization were performed for cancer and normal cells. Raw data were normalized (CHP files) and analyzed in Partek Genomics Suite Software. Differential gene expression was evaluated using one-way ANOVA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hoi Hung,,Cheung
| | Sample_contact_email | cheungho@mail.nih.gov
| | Sample_contact_phone | 301-451-8368
| | Sample_contact_laboratory | Laboratory of Clinical and Developmental Genomics
| | Sample_contact_institute | NICHD
| | Sample_contact_address | 49 Convent Dr, Rm.2C08 Bldg.49
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380012/suppl/GSM380012_NT2-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380012/suppl/GSM380012_NT2_1.CHP.gz
| | Sample_series_id | GSE15220
| | Sample_data_row_count | 54675
| | |
|
GSM380048 | GPL570 |
|
Normal_testis_cell_line_rep_1
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Cultured normal testis cell line (CRL-7002)
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gender: Male
tissue: testis
|
Expression data was coupled with the differential methylation analysis by tiling arrays.
|
| Sample_geo_accession | GSM380048
| | Sample_status | Public on Mar 18 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 90% confluent cells using Trizol Reagent. RNA was precipitated by isopropanol and resuspended in DEPC water. Total RNA was treated by DNaseI and purified by PureLink RNA Mini Kit (Invitrogen). RNA integrity and concentration was detected by BioAnalyzer (Agilent).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using GeneChip 3' IVT Expression Kit (Affymetrix) according to Affymetrix's protocol
| | Sample_hyb_protocol | Standard Affymetrix Hybridization protocol
| | Sample_scan_protocol | Arrays were scanned with GeneChip Scanner GCS3000 (7G)
| | Sample_data_processing | Triplicate sets of hybridization were performed for cancer and normal cells. Raw data were normalized (CHP files) and analyzed in Partek Genomics Suite Software. Differential gene expression was evaluated using one-way ANOVA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hoi Hung,,Cheung
| | Sample_contact_email | cheungho@mail.nih.gov
| | Sample_contact_phone | 301-451-8368
| | Sample_contact_laboratory | Laboratory of Clinical and Developmental Genomics
| | Sample_contact_institute | NICHD
| | Sample_contact_address | 49 Convent Dr, Rm.2C08 Bldg.49
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380048/suppl/GSM380048_HT-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380048/suppl/GSM380048_HT_1.CHP.gz
| | Sample_series_id | GSE15220
| | Sample_data_row_count | 54675
| | |
|
GSM380429 | GPL570 |
|
Normal_testis_cell_line_rep_2
|
Cultured normal testis cell line (CRL-7002)
|
gender: Male
tissue: testis
|
Expression data was coupled with the differential methylation analysis by tiling arrays.
|
| Sample_geo_accession | GSM380429
| | Sample_status | Public on Mar 18 2009
| | Sample_submission_date | Mar 15 2009
| | Sample_last_update_date | Mar 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 90% confluent cells using Trizol Reagent. RNA was precipitated by isopropanol and resuspended in DEPC water. Total RNA was treated by DNaseI and purified by PureLink RNA Mini Kit (Invitrogen). RNA integrity and concentration was detected by BioAnalyzer (Agilent).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using GeneChip 3' IVT Expression Kit (Affymetrix) according to Affymetrix's protocol
| | Sample_hyb_protocol | Standard Affymetrix Hybridization protocol
| | Sample_scan_protocol | Arrays were scanned with GeneChip Scanner GCS3000 (7G)
| | Sample_data_processing | Triplicate sets of hybridization were performed for cancer and normal cells. Raw data were normalized (CHP files) and analyzed in Partek Genomics Suite Software. Differential gene expression was evaluated using one-way ANOVA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hoi Hung,,Cheung
| | Sample_contact_email | cheungho@mail.nih.gov
| | Sample_contact_phone | 301-451-8368
| | Sample_contact_laboratory | Laboratory of Clinical and Developmental Genomics
| | Sample_contact_institute | NICHD
| | Sample_contact_address | 49 Convent Dr, Rm.2C08 Bldg.49
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380429/suppl/GSM380429_HT_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380429/suppl/GSM380429_HT_2.CHP.gz
| | Sample_series_id | GSE15220
| | Sample_data_row_count | 54675
| | |
|
GSM380430 | GPL570 |
|
Normal_testis_cell_line_rep_3
|
Cultured normal testis cell line (CRL-7002)
|
gender: Male
tissue: testis
|
Expression data was coupled with the differential methylation analysis by tiling arrays.
|
| Sample_geo_accession | GSM380430
| | Sample_status | Public on Mar 18 2009
| | Sample_submission_date | Mar 15 2009
| | Sample_last_update_date | Mar 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 90% confluent cells using Trizol Reagent. RNA was precipitated by isopropanol and resuspended in DEPC water. Total RNA was treated by DNaseI and purified by PureLink RNA Mini Kit (Invitrogen). RNA integrity and concentration was detected by BioAnalyzer (Agilent).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using GeneChip 3' IVT Expression Kit (Affymetrix) according to Affymetrix's protocol
| | Sample_hyb_protocol | Standard Affymetrix Hybridization protocol
| | Sample_scan_protocol | Arrays were scanned with GeneChip Scanner GCS3000 (7G)
| | Sample_data_processing | Triplicate sets of hybridization were performed for cancer and normal cells. Raw data were normalized (CHP files) and analyzed in Partek Genomics Suite Software. Differential gene expression was evaluated using one-way ANOVA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hoi Hung,,Cheung
| | Sample_contact_email | cheungho@mail.nih.gov
| | Sample_contact_phone | 301-451-8368
| | Sample_contact_laboratory | Laboratory of Clinical and Developmental Genomics
| | Sample_contact_institute | NICHD
| | Sample_contact_address | 49 Convent Dr, Rm.2C08 Bldg.49
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380430/suppl/GSM380430_HT_3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380430/suppl/GSM380430_HT_3.CHP.gz
| | Sample_series_id | GSE15220
| | Sample_data_row_count | 54675
| | |
|
GSM380431 | GPL570 |
|
Testicular_cancer_cell_line_rep_2
|
Cultured testicular cancer cell line (Ntera2)
|
gender: Male
age: 22
tissue: testis
|
Expression data was coupled with the differential methylation analysis by tiling arrays.
|
| Sample_geo_accession | GSM380431
| | Sample_status | Public on Mar 18 2009
| | Sample_submission_date | Mar 15 2009
| | Sample_last_update_date | Mar 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 90% confluent cells using Trizol Reagent. RNA was precipitated by isopropanol and resuspended in DEPC water. Total RNA was treated by DNaseI and purified by PureLink RNA Mini Kit (Invitrogen). RNA integrity and concentration was detected by BioAnalyzer (Agilent).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using GeneChip 3' IVT Expression Kit (Affymetrix) according to Affymetrix's protocol
| | Sample_hyb_protocol | Standard Affymetrix Hybridization protocol
| | Sample_scan_protocol | Arrays were scanned with GeneChip Scanner GCS3000 (7G)
| | Sample_data_processing | Triplicate sets of hybridization were performed for cancer and normal cells. Raw data were normalized (CHP files) and analyzed in Partek Genomics Suite Software. Differential gene expression was evaluated using one-way ANOVA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hoi Hung,,Cheung
| | Sample_contact_email | cheungho@mail.nih.gov
| | Sample_contact_phone | 301-451-8368
| | Sample_contact_laboratory | Laboratory of Clinical and Developmental Genomics
| | Sample_contact_institute | NICHD
| | Sample_contact_address | 49 Convent Dr, Rm.2C08 Bldg.49
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380431/suppl/GSM380431_NT2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380431/suppl/GSM380431_NT2_2.CHP.gz
| | Sample_series_id | GSE15220
| | Sample_data_row_count | 54675
| | |
|
GSM380432 | GPL570 |
|
Testicular_cancer_cell_line_rep_3
|
Cultured testicular cancer cell line (Ntera2)
|
gender: Male
age: 22
tissue: testis
|
Expression data was coupled with the differential methylation analysis by tiling arrays.
|
| Sample_geo_accession | GSM380432
| | Sample_status | Public on Mar 18 2009
| | Sample_submission_date | Mar 15 2009
| | Sample_last_update_date | Mar 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 90% confluent cells using Trizol Reagent. RNA was precipitated by isopropanol and resuspended in DEPC water. Total RNA was treated by DNaseI and purified by PureLink RNA Mini Kit (Invitrogen). RNA integrity and concentration was detected by BioAnalyzer (Agilent).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using GeneChip 3' IVT Expression Kit (Affymetrix) according to Affymetrix's protocol
| | Sample_hyb_protocol | Standard Affymetrix Hybridization protocol
| | Sample_scan_protocol | Arrays were scanned with GeneChip Scanner GCS3000 (7G)
| | Sample_data_processing | Triplicate sets of hybridization were performed for cancer and normal cells. Raw data were normalized (CHP files) and analyzed in Partek Genomics Suite Software. Differential gene expression was evaluated using one-way ANOVA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hoi Hung,,Cheung
| | Sample_contact_email | cheungho@mail.nih.gov
| | Sample_contact_phone | 301-451-8368
| | Sample_contact_laboratory | Laboratory of Clinical and Developmental Genomics
| | Sample_contact_institute | NICHD
| | Sample_contact_address | 49 Convent Dr, Rm.2C08 Bldg.49
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380432/suppl/GSM380432_NT2_3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380432/suppl/GSM380432_NT2_3.CHP.gz
| | Sample_series_id | GSE15220
| | Sample_data_row_count | 54675
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