Search results for the GEO ID: GSE15223  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM380154 | GPL1355 |
|
Control rat testes, biological rep 1
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380154
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380154/suppl/GSM380154.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380155 | GPL1355 |
|
Control rat testes, biological rep 2
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380155
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380155/suppl/GSM380155.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380156 | GPL1355 |
|
Control rat testes, biological rep 3
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380156
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380156/suppl/GSM380156.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380157 | GPL1355 |
|
Control rat testes, biological rep 4
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380157
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380157/suppl/GSM380157.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380158 | GPL1355 |
|
Control rat testes, biological rep 5
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380158
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380158/suppl/GSM380158.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380159 | GPL1355 |
|
Control rat testes, biological rep 6
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380159
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380159/suppl/GSM380159.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380160 | GPL1355 |
|
Control rat testes, biological rep 7
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380160
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380160/suppl/GSM380160.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380161 | GPL1355 |
|
Control rat testes, biological rep 8
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380161
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380161/suppl/GSM380161.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380162 | GPL1355 |
|
Control rat testes, biological rep 9
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380162
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380162/suppl/GSM380162.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380163 | GPL1355 |
|
Control rat testes, biological rep 10
|
rat testes, before irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380163
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380163/suppl/GSM380163.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380164 | GPL1355 |
|
Irradiated rat testes, biological rep 1
|
rat testes, after irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380164
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380164/suppl/GSM380164.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380165 | GPL1355 |
|
Irradiated rat testes, biological rep 2
|
rat testes, after irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380165
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380165/suppl/GSM380165.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380166 | GPL1355 |
|
Irradiated rat testes, biological rep 3
|
rat testes, after irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380166
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380166/suppl/GSM380166.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380167 | GPL1355 |
|
Irradiated rat testes, biological rep 4
|
rat testes, after irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380167
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380167/suppl/GSM380167.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
GSM380168 | GPL1355 |
|
Irradiated rat testes, biological rep 5
|
rat testes, after irradiation
|
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380168
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 13 2009
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380168/suppl/GSM380168.CEL.gz
| | Sample_series_id | GSE15223
| | Sample_data_row_count | 31099
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
