Search results for the GEO ID: GSE15243  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM380550 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 1
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380550
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380550/suppl/GSM380550.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380551 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 2
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380551
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380551/suppl/GSM380551.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380552 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 3
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380552
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380552/suppl/GSM380552.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380553 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 4
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380553
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380553/suppl/GSM380553.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380554 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 5
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380554
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380554/suppl/GSM380554.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380555 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 6
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380555
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380555/suppl/GSM380555.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380556 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 7
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380556
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380556/suppl/GSM380556.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380557 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 8
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380557
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380557/suppl/GSM380557.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380558 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 9
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380558
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380558/suppl/GSM380558.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380559 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 10
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from control rat testes
|
| Sample_geo_accession | GSM380559
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380559/suppl/GSM380559.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380560 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 11
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380560
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380560/suppl/GSM380560.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380561 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 12
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380561
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380561/suppl/GSM380561.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380562 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 13
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380562
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380562/suppl/GSM380562.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380563 | GPL1355 |
|
Irradiated rat testes, with sham treatment, biological rep 14
|
Irradiated rat testes, with sham treatment
|
treatment: Irradiated rat testes, with sham treatment
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380563
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380563/suppl/GSM380563.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380564 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 1
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380564
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380564/suppl/GSM380564.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380565 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 2
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380565
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380565/suppl/GSM380565.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380566 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 3
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380566
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380566/suppl/GSM380566.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380567 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 4
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380567
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380567/suppl/GSM380567.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380568 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 5
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380568
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380568/suppl/GSM380568.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380569 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 6
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380569
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380569/suppl/GSM380569.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380570 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 7
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380570
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380570/suppl/GSM380570.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380571 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 8
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380571
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380571/suppl/GSM380571.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380572 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 9
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380572
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380572/suppl/GSM380572.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380573 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 10
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380573
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380573/suppl/GSM380573.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380574 | GPL1355 |
|
Irradiated rat testes, with hormonal ablation, biological rep 11
|
Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
|
treatment: Irradiated rat testes, with hormonal ablation (GnRH antagonist and the androgen receptor antagonist flutamide)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380574
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380574/suppl/GSM380574.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_series_id | GSE24672
| | Sample_data_row_count | 31099
| | |
|
GSM380575 | GPL1355 |
|
Irradiated rat testes, with testosterone supplementation, biological rep 1
|
Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
|
treatment: Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380575
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380575/suppl/GSM380575.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380576 | GPL1355 |
|
Irradiated rat testes, with testosterone supplementation, biological rep 2
|
Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
|
treatment: Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380576
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380576/suppl/GSM380576.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380577 | GPL1355 |
|
Irradiated rat testes, with testosterone supplementation, biological rep 3
|
Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
|
treatment: Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380577
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380577/suppl/GSM380577.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380578 | GPL1355 |
|
Irradiated rat testes, with testosterone supplementation, biological rep 4
|
Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
|
treatment: Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380578
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380578/suppl/GSM380578.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380579 | GPL1355 |
|
Irradiated rat testes, with testosterone supplementation, biological rep 5
|
Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
|
treatment: Irradiated rat testes, with testosterone supplementation (GnRH antagonist and testosterone)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380579
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380579/suppl/GSM380579.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380580 | GPL1355 |
|
Irradiated rat testes, with FSH supplementation, biological rep 1
|
Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
|
treatment: Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380580
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380580/suppl/GSM380580.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380581 | GPL1355 |
|
Irradiated rat testes, with FSH supplementation, biological rep 2
|
Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
|
treatment: Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380581
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380581/suppl/GSM380581.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380582 | GPL1355 |
|
Irradiated rat testes, with FSH supplementation, biological rep 3
|
Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
|
treatment: Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380582
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380582/suppl/GSM380582.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380583 | GPL1355 |
|
Irradiated rat testes, with FSH supplementation, biological rep 4
|
Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
|
treatment: Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380583
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380583/suppl/GSM380583.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
GSM380584 | GPL1355 |
|
Irradiated rat testes, with FSH supplementation, biological rep 5
|
Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
|
treatment: Irradiated rat testes, with FSH supplementation (GnRH antagonist, androgen receptor antagonist, and FSH)
tissue: testes
genotype: LBNF1 rat
age: 25~27 weeks old
|
gene expression data from irradiated rat testes
|
| Sample_geo_accession | GSM380584
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Mar 16 2009
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 6 Gy irradiation to the lower abdomen of the rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Midi Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Rat Genome 230 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner and quantified with Affymetrix GCOS 1.2.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. After normalization, the expression levels within each chip were divided by the median value for all the probes whose expression was regarded as present on the array, and then log base 2 transformed.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Wei,,Zhou
| | Sample_contact_email | wzhou@mdanderson.org
| | Sample_contact_fax | 7137945369
| | Sample_contact_department | Department of Experimental Radiation Oncology
| | Sample_contact_institute | M.D.Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM380nnn/GSM380584/suppl/GSM380584.CEL.gz
| | Sample_series_id | GSE15243
| | Sample_data_row_count | 31099
| | |
|
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