Search results for the GEO ID: GSE15326  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM384911 | GPL1261 |
|
LKR13_Kras sh-1
|
LKR13, knockdown of K-ras by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384911
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying one of two shRNAs against K-ras. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384911/suppl/GSM384911.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384911/suppl/GSM384911.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384912 | GPL1261 |
|
LKR13_Kras sh-2
|
LKR13, knockdown of K-ras by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384912
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying one of two shRNAs against K-ras. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384912/suppl/GSM384912.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384912/suppl/GSM384912.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384913 | GPL1261 |
|
LKR13_Wt1 sh-1
|
LKR13, knockdown of Wt1 by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384913
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying one of two shRNAs against Wt1. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384913/suppl/GSM384913.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384913/suppl/GSM384913.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384914 | GPL1261 |
|
LKR13_Wt1 sh-2
|
LKR13, knockdown of Wt1 by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384914
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying one of two shRNAs against Wt1. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384914/suppl/GSM384914.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384914/suppl/GSM384914.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384915 | GPL1261 |
|
LKR13_Control-1
|
LKR13, knockdown of GFP by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384915
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying an shRNA against GFP. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384915/suppl/GSM384915.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384915/suppl/GSM384915.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384916 | GPL1261 |
|
LKR13_Control-2
|
LKR13, knockdown of GFP by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384916
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying an shRNA against GFP. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384916/suppl/GSM384916.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384916/suppl/GSM384916.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384917 | GPL1261 |
|
LKR13_Control-3
|
LKR13, knockdown of GFP by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384917
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying an shRNA against GFP. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384917/suppl/GSM384917.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384917/suppl/GSM384917.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384918 | GPL1261 |
|
LKR13_Control-4
|
LKR13, knockdown of GFP by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384918
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying an shRNA against GFP. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384918/suppl/GSM384918.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384918/suppl/GSM384918.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384919 | GPL1261 |
|
LKR13_Kras sh-3
|
LKR13, knockdown of K-ras by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384919
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying one of two shRNAs against K-ras. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | Biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384919/suppl/GSM384919.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384919/suppl/GSM384919.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
|
GSM384920 | GPL1261 |
|
LKR13_Kras sh-4
|
LKR13, knockdown of K-ras by shRNA
|
cell line: LKR13
|
Cell lines derived from Kras-mutant mouse lung cancer model (KrasLA). Tyler Jacks lab (Johnson et al., 2001)
|
| Sample_geo_accession | GSM384920
| | Sample_status | Public on Mar 01 2010
| | Sample_submission_date | Mar 20 2009
| | Sample_last_update_date | Nov 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LKR13 cells were infected with plko.1s vectors carrying one of two shRNAs against K-ras. 48 hours after infection, cells were selected with puromycin for 3 days. RNA was extracted 7 days post-infection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using Trizol 7 days after infection. RNA was further prepared by passage over an RNeasy column. cDNA synthesis, biotinylation of cRNA and hybridization to mouse Genechip 430_2 was performed according to the manufacturer’s instructions (Affymetrix, Santa Clara).
| | Sample_label_ch1 | biotinylation
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Microarray data was normalized with Expression Console software (Affymetrix, Santa Clara), using RMA algorithms.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | E.Alejandro ,,Sweet-Cordero
| | Sample_contact_email | ascor@stanford.edu
| | Sample_contact_phone | (650) 725-5901
| | Sample_contact_fax | (650) 736-0195
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | CCSR-1215B, 269 Campus Dr
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://sweetcorderolab.stanford.edu/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384920/suppl/GSM384920.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM384nnn/GSM384920/suppl/GSM384920.chp.gz
| | Sample_series_id | GSE15326
| | Sample_data_row_count | 45101
| | |
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