Search results for the GEO ID: GSE15458  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM294842 | GPL1261 |
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AML12 control (3h)
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AML12 control (3h)
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cell type: cultured hepatocytes
cell line: AML12
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AML12 no treatment control
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| Sample_geo_accession | GSM294842
| | Sample_status | Public on Jun 15 2008
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | Apr 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | AML12 cells were exposed to 1 micromolar RA for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Trizol and processed using the RNeasy kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_hyb_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_scan_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_data_processing | Expression data were analyzed by the software DNA-Chip Analyzer (dCHIP) available at www.dchip.org.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tereza,,Ventura-Holman
| | Sample_contact_email | tholman@medicine.umsmed.edu
| | Sample_contact_institute | University of Mississippi Medical Center
| | Sample_contact_address | 2500 North State St.
| | Sample_contact_city | Jackson
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 39216
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294842/suppl/GSM294842.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294842/suppl/GSM294842.CHP.gz
| | Sample_series_id | GSE11703
| | Sample_series_id | GSE15458
| | Sample_data_row_count | 45037
| | |
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GSM296415 | GPL1261 |
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AML12 control (24h)
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AML12 control (24h)
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cell type: cultured hepatocytes
cell line: AML12
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AML12 cells- no treatment control
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| Sample_geo_accession | GSM296415
| | Sample_status | Public on Jun 15 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Apr 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Trizol and processed using the RNeasy kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_hyb_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_scan_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_data_processing | Expression data were analyzed by the software DNA-Chip Analyzer (dCHIP) available at www.dchip.org
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tereza,,Ventura-Holman
| | Sample_contact_email | tholman@medicine.umsmed.edu
| | Sample_contact_institute | University of Mississippi Medical Center
| | Sample_contact_address | 2500 North State St.
| | Sample_contact_city | Jackson
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 39216
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296415/suppl/GSM296415.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296415/suppl/GSM296415.CHP.gz
| | Sample_series_id | GSE11703
| | Sample_series_id | GSE15458
| | Sample_data_row_count | 45037
| | |
|
GSM297234 | GPL1261 |
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v-erbA-transfected AML12 control (3h)
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v-erbA-transfected AML12 control (3h)
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cell type: v-erbA-transfected cultured hepatocytes
cell line: AML12
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v-erbA-transfected AML12 cells, 3h control
|
| Sample_geo_accession | GSM297234
| | Sample_status | Public on Jun 15 2008
| | Sample_submission_date | Jun 06 2008
| | Sample_last_update_date | Apr 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Trizol and processed using the RNeasy kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_hyb_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_scan_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_data_processing | Expression data were analyzed by the software DNA-Chip Analyzer (dCHIP) available at www.dchip.org
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tereza,,Ventura-Holman
| | Sample_contact_email | tholman@medicine.umsmed.edu
| | Sample_contact_institute | University of Mississippi Medical Center
| | Sample_contact_address | 2500 North State St.
| | Sample_contact_city | Jackson
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 39216
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM297nnn/GSM297234/suppl/GSM297234.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM297nnn/GSM297234/suppl/GSM297234.CHP.gz
| | Sample_series_id | GSE11703
| | Sample_series_id | GSE15458
| | Sample_data_row_count | 45037
| | |
|
GSM297235 | GPL1261 |
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v-erbA-transfected AML12 control (24h)
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v-erbA-transfected AML12 control (24h)
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cell type: v-erbA-transfected cultured hepatocytes
cell line: AML12
|
v-erbA-transfected AML12 cells, 3h control
|
| Sample_geo_accession | GSM297235
| | Sample_status | Public on Jun 15 2008
| | Sample_submission_date | Jun 06 2008
| | Sample_last_update_date | Apr 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Trizol and processed using the RNeasy kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_hyb_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_scan_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_data_processing | Expression data were analyzed by the software DNA-Chip Analyzer (dCHIP) available at www.dchip.org
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tereza,,Ventura-Holman
| | Sample_contact_email | tholman@medicine.umsmed.edu
| | Sample_contact_institute | University of Mississippi Medical Center
| | Sample_contact_address | 2500 North State St.
| | Sample_contact_city | Jackson
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 39216
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM297nnn/GSM297235/suppl/GSM297235.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM297nnn/GSM297235/suppl/GSM297235.CHP.gz
| | Sample_series_id | GSE11703
| | Sample_series_id | GSE15458
| | Sample_data_row_count | 45037
| | |
|
GSM387753 | GPL1261 |
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AML12+T3 (3h)
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AML12+T3(3h)
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cell type: cultured hepatocytes
cell line: AML12
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AML12 cells exposed to 10nM T3 for 3h
|
| Sample_geo_accession | GSM387753
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Mar 30 2009
| | Sample_last_update_date | May 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | AML12 hepatocytes were exposed to 10 nM thyroid hormone (T3) for 3h
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted with Trizol and processed using the RNeasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_hyb_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_scan_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_data_processing | Expression data were analyzed by the software DNA-Chip Analyzer (dCHIP) available at www.dchip.org
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tereza,,Ventura-Holman
| | Sample_contact_email | tholman@medicine.umsmed.edu
| | Sample_contact_institute | University of Mississippi Medical Center
| | Sample_contact_address | 2500 North State St.
| | Sample_contact_city | Jackson
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 39216
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM387nnn/GSM387753/suppl/GSM387753.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM387nnn/GSM387753/suppl/GSM387753.CHP.gz
| | Sample_series_id | GSE15458
| | Sample_data_row_count | 45101
| | |
|
GSM387754 | GPL1261 |
|
AML12+T3 (24h)
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AML12+T3(24h)
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cell type: cultured hepatocytes
cell line: AML12
|
AML12 cells exposed to 10nM T3 for 24h
|
| Sample_geo_accession | GSM387754
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Mar 30 2009
| | Sample_last_update_date | May 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | AML12 hepatocytes were exposed to 10 nM thyroid hormone (T3) for 24h
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted with Trizol and processed using the RNeasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_hyb_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_scan_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_data_processing | Expression data were analyzed by the software DNA-Chip Analyzer (dCHIP) available at www.dchip.org
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tereza,,Ventura-Holman
| | Sample_contact_email | tholman@medicine.umsmed.edu
| | Sample_contact_institute | University of Mississippi Medical Center
| | Sample_contact_address | 2500 North State St.
| | Sample_contact_city | Jackson
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 39216
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM387nnn/GSM387754/suppl/GSM387754.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM387nnn/GSM387754/suppl/GSM387754.CHP.gz
| | Sample_series_id | GSE15458
| | Sample_data_row_count | 45101
| | |
|
GSM387755 | GPL1261 |
|
T3-treated, v-erbA-transfected AML12 (3h)
|
T3-treated, v-erbA-transfected AML12 (3h)
|
cell type: v-erbA-transfected cultured hepatocytes
cell line: AML12
|
v-erbA-transfected AML12 cells exposed to 10nM T3 for 3h
|
| Sample_geo_accession | GSM387755
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Mar 30 2009
| | Sample_last_update_date | May 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | v-erbA transfected AML12 hepatocytes were exposed to 10 nM thyroid hormone (T3) for 3h
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted with Trizol and processed using the RNeasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_hyb_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_scan_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_data_processing | Expression data were analyzed by the software DNA-Chip Analyzer (dCHIP) available at www.dchip.org
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tereza,,Ventura-Holman
| | Sample_contact_email | tholman@medicine.umsmed.edu
| | Sample_contact_institute | University of Mississippi Medical Center
| | Sample_contact_address | 2500 North State St.
| | Sample_contact_city | Jackson
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 39216
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM387nnn/GSM387755/suppl/GSM387755.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM387nnn/GSM387755/suppl/GSM387755.CHP.gz
| | Sample_series_id | GSE15458
| | Sample_data_row_count | 45101
| | |
|
GSM387756 | GPL1261 |
|
T3-treated, v-erbA-transfected AML12 (24h)
|
T3-treated, v-erbA-transfected AML12 (24h)
|
cell type: v-erbA-transfected cultured hepatocytes
cell line: AML12
|
v-erbA-transfected AML12 cells exposed to 10nM T3 for 3h
|
| Sample_geo_accession | GSM387756
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Mar 30 2009
| | Sample_last_update_date | May 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | v-erbA transfected AML12 hepatocytes were exposed to 10 nM thyroid hormone (T3) for 24h
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted with Trizol and processed using the RNeasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_hyb_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_scan_protocol | following Affymetrix GeneChip Expression Analysis Manual
| | Sample_data_processing | Expression data were analyzed by the software DNA-Chip Analyzer (dCHIP) available at www.dchip.org
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tereza,,Ventura-Holman
| | Sample_contact_email | tholman@medicine.umsmed.edu
| | Sample_contact_institute | University of Mississippi Medical Center
| | Sample_contact_address | 2500 North State St.
| | Sample_contact_city | Jackson
| | Sample_contact_state | MS
| | Sample_contact_zip/postal_code | 39216
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM387nnn/GSM387756/suppl/GSM387756.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM387nnn/GSM387756/suppl/GSM387756.CHP.gz
| | Sample_series_id | GSE15458
| | Sample_data_row_count | 45101
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