Search results for the GEO ID: GSE15543  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM388740 | GPL570 |
|
PPRF-ILC-day4
|
re-differentiated cells, PPRF protocol, day 4
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with PPRF protocol day 4
|
| Sample_geo_accession | GSM388740
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_growth_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388740/suppl/GSM388740.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388741 | GPL570 |
|
PPRF-ILC-day6
|
re-differentiated cells, PPRF protocol, day 6
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with PPRF protocol day 6
|
| Sample_geo_accession | GSM388741
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_growth_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388741/suppl/GSM388741.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388742 | GPL570 |
|
PPRF-ILC-day8
|
re-differentiated cells, PPRF protocol, day 8
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with PPRF protocol day 8
|
| Sample_geo_accession | GSM388742
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_growth_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388742/suppl/GSM388742.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388743 | GPL570 |
|
PPRF-ILC-day8_2
|
re-differentiated cells, PPRF protocol, day 8
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with PPRF protocol day 8
|
| Sample_geo_accession | GSM388743
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_growth_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388743/suppl/GSM388743.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388744 | GPL570 |
|
PPRF_MIPC
|
expanded islet cells, PPRF protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with PPRF protocol
|
| Sample_geo_accession | GSM388744
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388744/suppl/GSM388744.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388745 | GPL570 |
|
PPRF-ILC-day2
|
re-differentiated cells, PPRF protocol, day 2
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with PPRF protocol day 2
|
| Sample_geo_accession | GSM388745
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_growth_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388745/suppl/GSM388745.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388746 | GPL570 |
|
PPRF-ILC-day2_2
|
re-differentiated cells, PPRF protocol, day 2
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with PPRF protocol day 2
|
| Sample_geo_accession | GSM388746
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_growth_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388746/suppl/GSM388746.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388747 | GPL570 |
|
PPRF-ILC-day4_2
|
re-differentiated cells, PPRF protocol, day 4
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with PPRF protocol day 4
|
| Sample_geo_accession | GSM388747
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_growth_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388747/suppl/GSM388747.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388748 | GPL570 |
|
PPRF-ILC-day6_2
|
re-differentiated cells, PPRF protocol, day 6
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with PPRF protocol day 6
|
| Sample_geo_accession | GSM388748
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_growth_protocol_ch1 | INGAP 1.0 ug/mL
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388748/suppl/GSM388748.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388749 | GPL570 |
|
islets_2
|
islets
|
cell type: fresh islets
|
Fresh pancreatic islets
|
| Sample_geo_accession | GSM388749
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388749/suppl/GSM388749.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388750 | GPL570 |
|
islets_3
|
islets
|
cell type: fresh islets
|
Fresh pancreatic islets
|
| Sample_geo_accession | GSM388750
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388750/suppl/GSM388750.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388751 | GPL570 |
|
PPRF_MIPC_2
|
expanded islet cells, PPRF protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with PPRF protocol
|
| Sample_geo_accession | GSM388751
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388751/suppl/GSM388751.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388752 | GPL570 |
|
Hayek_H298_P4
|
expanded islet cells, Whittier protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with Whittier protocol
|
| Sample_geo_accession | GSM388752
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 25 ng/ml HGF
| | Sample_growth_protocol_ch1 | 25 ng/ml HGF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388752/suppl/GSM388752.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388754 | GPL570 |
|
islets_5
|
islets
|
cell type: fresh islets
|
Fresh pancreatic islets
|
| Sample_geo_accession | GSM388754
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388754/suppl/GSM388754.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388755 | GPL570 |
|
Gersh_G298_diff
|
re-differentiated cells, NIH protocol
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with NIH protocol
|
| Sample_geo_accession | GSM388755
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388755/suppl/GSM388755.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388756 | GPL570 |
|
Hayek_H298_diff
|
re-differentiated cells, Whittier protocol
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with Whittier protocol
|
| Sample_geo_accession | GSM388756
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 25 ng/ml HGF
| | Sample_growth_protocol_ch1 | 25 ng/ml HGF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388756/suppl/GSM388756.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388757 | GPL570 |
|
Gersh_G298_P4
|
expanded islet cells, NIH protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with NIH protocol
|
| Sample_geo_accession | GSM388757
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388757/suppl/GSM388757.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388758 | GPL570 |
|
Gersh_HA293_diff
|
re-differentiated cells, NIH protocol
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with NIH protocol
|
| Sample_geo_accession | GSM388758
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388758/suppl/GSM388758.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388759 | GPL570 |
|
islets_6
|
islets
|
cell type: fresh islets
|
Fresh pancreatic islets
|
| Sample_geo_accession | GSM388759
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388759/suppl/GSM388759.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388760 | GPL570 |
|
islets_7
|
islets
|
cell type: fresh islets
|
Fresh pancreatic islets
|
| Sample_geo_accession | GSM388760
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388760/suppl/GSM388760.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388761 | GPL570 |
|
Hayek_HA293_p3
|
expanded islet cells, Whittier protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with Whittier protocol
|
| Sample_geo_accession | GSM388761
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 25 ng/ml HGF
| | Sample_growth_protocol_ch1 | 25 ng/ml HGF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388761/suppl/GSM388761.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388762 | GPL570 |
|
Hayek_HA293_diff
|
re-differentiated cells, Whittier protocol
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with Whittier protocol
|
| Sample_geo_accession | GSM388762
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388762/suppl/GSM388762.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388763 | GPL570 |
|
Gersh_HA293_p3
|
expanded islet cells, NIH protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with NIH protocol
|
| Sample_geo_accession | GSM388763
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 25 ng/ml HGF
| | Sample_growth_protocol_ch1 | 25 ng/ml HGF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388763/suppl/GSM388763.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388764 | GPL570 |
|
Hayek_HA290_diff
|
re-differentiated cells, Whittier protocol
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with Whittier protocol
|
| Sample_geo_accession | GSM388764
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388764/suppl/GSM388764.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388765 | GPL570 |
|
Hayek_HA290_p3
|
expanded islet cells, Whittier protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with Whittier protocol
|
| Sample_geo_accession | GSM388765
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 25 ng/ml HGF
| | Sample_growth_protocol_ch1 | 25 ng/ml HGF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388765/suppl/GSM388765.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388766 | GPL570 |
|
islets_8
|
islets
|
cell type: fresh islets
|
Fresh pancreatic islets
|
| Sample_geo_accession | GSM388766
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388766/suppl/GSM388766.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388767 | GPL570 |
|
islets_9
|
islets
|
cell type: fresh islets
|
Fresh pancreatic islets
|
| Sample_geo_accession | GSM388767
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388767/suppl/GSM388767.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388768 | GPL570 |
|
Gersh_HA290_diff
|
re-differentiated cells, NIH protocol
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with NIH protocol
|
| Sample_geo_accession | GSM388768
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388768/suppl/GSM388768.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388769 | GPL570 |
|
Gersh_HA290_p3
|
expanded islet cells, NIH protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with NIH protocol
|
| Sample_geo_accession | GSM388769
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388769/suppl/GSM388769.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388770 | GPL570 |
|
Gersh_HA279_p4
|
expanded islet cells, NIH protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with NIH protocol
|
| Sample_geo_accession | GSM388770
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388770/suppl/GSM388770.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388771 | GPL570 |
|
Hayek_HA280_p3
|
expanded islet cells, Whittier protocol
|
cell type: expanded islets
|
Expanded islet cells obtained with Whittier protocol
|
| Sample_geo_accession | GSM388771
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388771/suppl/GSM388771.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
GSM388772 | GPL570 |
|
Gersh_HA279_diff
|
re-differentiated cells, NIH protocol
|
cell type: re-differentiated cells after expansion from islets
|
Re-differentiated cells after expansion from islets with NIH protocol
|
| Sample_geo_accession | GSM388772
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Apr 01 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM388nnn/GSM388772/suppl/GSM388772.CEL.gz
| | Sample_series_id | GSE15543
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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