Search results for the GEO ID: GSE15587  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM389859 | GPL1261 |
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H0019466: CD133 low
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CD133 low
|
flow cytometry fraction: CD133 low
cell type: 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice)
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CD133 low
|
| Sample_geo_accession | GSM389859
| | Sample_status | Public on Feb 24 2011
| | Sample_submission_date | Apr 07 2009
| | Sample_last_update_date | Feb 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice) were sorted by flow cytometry into CD133high and CD133low fractions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the Ambion kit. RNA quality and quantity were evaluated on a NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430 2.0 GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM389nnn/GSM389859/suppl/GSM389859.CEL.gz
| | Sample_series_id | GSE15587
| | Sample_data_row_count | 45101
| | |
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GSM389860 | GPL1261 |
|
H0019467: CD133 low
|
CD133 low
|
flow cytometry fraction: CD133 low
cell type: 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice)
|
CD133 low
|
| Sample_geo_accession | GSM389860
| | Sample_status | Public on Feb 24 2011
| | Sample_submission_date | Apr 07 2009
| | Sample_last_update_date | Feb 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice) were sorted by flow cytometry into CD133high and CD133low fractions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the Ambion kit. RNA quality and quantity were evaluated on a NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430 2.0 GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM389nnn/GSM389860/suppl/GSM389860.CEL.gz
| | Sample_series_id | GSE15587
| | Sample_data_row_count | 45101
| | |
|
GSM389861 | GPL1261 |
|
H0019468: CD133 low
|
CD133 low
|
flow cytometry fraction: CD133 low
cell type: 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice)
|
CD133 low
|
| Sample_geo_accession | GSM389861
| | Sample_status | Public on Feb 24 2011
| | Sample_submission_date | Apr 07 2009
| | Sample_last_update_date | Feb 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice) were sorted by flow cytometry into CD133high and CD133low fractions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the Ambion kit. RNA quality and quantity were evaluated on a NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430 2.0 GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM389nnn/GSM389861/suppl/GSM389861.CEL.gz
| | Sample_series_id | GSE15587
| | Sample_data_row_count | 45101
| | |
|
GSM389862 | GPL1261 |
|
H0019469: CD133 high
|
CD133 high
|
flow cytometry fraction: CD133 high
cell type: 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice)
|
CD133 high
|
| Sample_geo_accession | GSM389862
| | Sample_status | Public on Feb 24 2011
| | Sample_submission_date | Apr 07 2009
| | Sample_last_update_date | Feb 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice) were sorted by flow cytometry into CD133high and CD133low fractions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the Ambion kit. RNA quality and quantity were evaluated on a NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430 2.0 GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM389nnn/GSM389862/suppl/GSM389862.CEL.gz
| | Sample_series_id | GSE15587
| | Sample_data_row_count | 45101
| | |
|
GSM389863 | GPL1261 |
|
H0019470: CD133 high
|
CD133 high
|
flow cytometry fraction: CD133 high
cell type: 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice)
|
CD133 high
|
| Sample_geo_accession | GSM389863
| | Sample_status | Public on Feb 24 2011
| | Sample_submission_date | Apr 07 2009
| | Sample_last_update_date | Feb 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice) were sorted by flow cytometry into CD133high and CD133low fractions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the Ambion kit. RNA quality and quantity were evaluated on a NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430 2.0 GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM389nnn/GSM389863/suppl/GSM389863.CEL.gz
| | Sample_series_id | GSE15587
| | Sample_data_row_count | 45101
| | |
|
GSM389864 | GPL1261 |
|
H0019471: CD133 high
|
CD133 high
|
flow cytometry fraction: CD133 high
cell type: 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice)
|
CD133 high
|
| Sample_geo_accession | GSM389864
| | Sample_status | Public on Feb 24 2011
| | Sample_submission_date | Apr 07 2009
| | Sample_last_update_date | Feb 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 344SQ subcutaneous tumors (from a lung adenocarcinoma cell line derived from a KrasLA1/+; p53R172HdelG/+ mouse that metastasizes widely following subcutaneous injection into syngeneic mice) were sorted by flow cytometry into CD133high and CD133low fractions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the Ambion kit. RNA quality and quantity were evaluated on a NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430 2.0 GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM389nnn/GSM389864/suppl/GSM389864.CEL.gz
| | Sample_series_id | GSE15587
| | Sample_data_row_count | 45101
| | |
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