Search results for the GEO ID: GSE15610  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM390796 | GPL1261 |
|
Control_untreated_replicate 1
|
bone marrow-derived macrophages, control, untreated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre-/-
gender: female
|
Biological replicate 1 of 3.
|
| Sample_geo_accession | GSM390796
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390796/suppl/GSM390796.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390797 | GPL1261 |
|
Control_untreated_replicate 2
|
bone marrow-derived macrophages, control, untreated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre-/-
gender: female
|
Biological replicate 2 of 3.
|
| Sample_geo_accession | GSM390797
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390797/suppl/GSM390797.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390798 | GPL1261 |
|
Control_untreated_replicate 3
|
bone marrow-derived macrophages, control, untreated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre-/-
gender: female
|
Biological replicate 3 of 3.
|
| Sample_geo_accession | GSM390798
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390798/suppl/GSM390798.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390799 | GPL1261 |
|
Knockout_untreated_replicate 1
|
bone marrow-derived macrophages, trsp knockout, untreated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre+/-
gender: female
|
Biological replicate 1 of 3.
|
| Sample_geo_accession | GSM390799
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390799/suppl/GSM390799.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390800 | GPL1261 |
|
Knockout_untreated_replicate 2
|
bone marrow-derived macrophages, trsp knockout, untreated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre+/-
gender: female
|
Biological replicate 2 of 3.
|
| Sample_geo_accession | GSM390800
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390800/suppl/GSM390800.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390801 | GPL1261 |
|
Knockout_untreated_replicate 3
|
bone marrow-derived macrophages, trsp knockout, untreated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre+/-
gender: female
|
Biological replicate 3 of 3.
|
| Sample_geo_accession | GSM390801
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390801/suppl/GSM390801.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390802 | GPL1261 |
|
Control_4h lipopolysaccharide_replicate 1
|
bone marrow-derived macrophages, control, LPS stimulated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre-/-
gender: female
treatment: LPS
|
Biological replicate 1 of 3.
|
| Sample_geo_accession | GSM390802
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390802/suppl/GSM390802.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390803 | GPL1261 |
|
Control_4h lipopolysaccharide_replicate 2
|
bone marrow-derived macrophages, control, LPS stimulated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre-/-
gender: female
treatment: LPS
|
Biological replicate 2 of 3.
|
| Sample_geo_accession | GSM390803
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390803/suppl/GSM390803.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390804 | GPL1261 |
|
Control_4h lipopolysaccharide_replicate 3
|
bone marrow-derived macrophages, control, LPS stimulated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre-/-
gender: female
treatment: LPS
|
Biological replicate 3 of 3.
|
| Sample_geo_accession | GSM390804
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390804/suppl/GSM390804.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390805 | GPL1261 |
|
Knockout_4h lipopolysaccharide_replicate 1
|
bone marrow-derived macrophages, trsp knockout, LPS stimulated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre+/-
gender: female
treatment: LPS
|
Biological replicate 1 of 3.
|
| Sample_geo_accession | GSM390805
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390805/suppl/GSM390805.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390806 | GPL1261 |
|
Knockout_4h lipopolysaccharide_replicate 2
|
bone marrow-derived macrophages, trsp knockout, LPS stimulated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre+/-
gender: female
treatment: LPS
|
Biological replicate 2 of 3.
|
| Sample_geo_accession | GSM390806
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390806/suppl/GSM390806.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
| | |
|
GSM390807 | GPL1261 |
|
Knockout_4h lipopolysaccharide_replicate 3
|
bone marrow-derived macrophages, trsp knockout, LPS stimulated
|
strain: c57bl6
genotype: Trspfl/fl-LysM-Cre+/-
gender: female
treatment: LPS
|
Biological replicate 3 of 3.
|
| Sample_geo_accession | GSM390807
| | Sample_status | Public on Dec 22 2009
| | Sample_submission_date | Apr 08 2009
| | Sample_last_update_date | Dec 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | BMDM were treated with or without LPS for 4h, cells washed with PBS and cells harvested.
| | Sample_growth_protocol_ch1 | Bone marrow cells were differentiated for 7 days in the presence of M-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol (Invitrogen) following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip® IVT Labeling Kit according to manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was done according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix). Image analysis was performed using GCOS 1.3 (Affymetrix).
| | Sample_data_processing | For data processing, data files (in txt format) and cel files were imported into the microarray database (mAdb) and analyzed by software tools provided by the National Cancer Institute, Center for Cancer Research in collaboration with the National Institutes of Health, Center for Information Technology, Bioinformatics and Molecular Analysis Section. All Absent calls were excluded.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bradley,A,Carlson
| | Sample_contact_email | carlsonb@mail.nih.gov
| | Sample_contact_phone | 301 402 6432
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM390nnn/GSM390807/suppl/GSM390807.CEL.gz
| | Sample_series_id | GSE15610
| | Sample_data_row_count | 45101
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