Search results for the GEO ID: GSE15620  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM391016 | GPL1261 |
|
mouse erythroleukemia_wild type_replicate 1, MAS5
|
MEL, wild type
|
cell type: mouse erythroleukemia
|
wild type
|
| Sample_geo_accession | GSM391016
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391016/suppl/GSM391016.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391017 | GPL1261 |
|
mouse erythroleukemia_wild type_replicate 2, MAS5
|
MEL, wild type
|
cell type: mouse erythroleukemia
|
wild type
|
| Sample_geo_accession | GSM391017
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391017/suppl/GSM391017.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391018 | GPL1261 |
|
mouse erythroleukemia_wild type_replicate 3, MAS5
|
MEL, wild type
|
cell type: mouse erythroleukemia
|
wild type
|
| Sample_geo_accession | GSM391018
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391018/suppl/GSM391018.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391019 | GPL1261 |
|
mouse erythroleukemia_G9a knockdown_replicate 1, MAS5
|
MEL, G9a knockdown
|
cell type: mouse erythroleukemia
|
G9a knockdown
|
| Sample_geo_accession | GSM391019
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391019/suppl/GSM391019.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391020 | GPL1261 |
|
mouse erythroleukemia_G9a knockdown_replicate 2, MAS5
|
MEL, G9a knockdown
|
cell type: mouse erythroleukemia
|
G9a knockdown
|
| Sample_geo_accession | GSM391020
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391020/suppl/GSM391020.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391021 | GPL1261 |
|
mouse erythroleukemia_G9a knockdown_replicate 3, MAS5
|
MEL, G9a knockdown
|
cell type: mouse erythroleukemia
|
G9a knockdown
|
| Sample_geo_accession | GSM391021
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391021/suppl/GSM391021.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391022 | GPL1261 |
|
mouse erythroleukemia_wild type_replicate 1, GCRMA
|
MEL, wild type
|
cell type: mouse erythroleukemia
|
wild type
|
| Sample_geo_accession | GSM391022
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | GCRMA normalization using R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391022/suppl/GSM391022.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391023 | GPL1261 |
|
mouse erythroleukemia_wild type_replicate 2, GCRMA
|
MEL, wild type
|
cell type: mouse erythroleukemia
|
wild type
|
| Sample_geo_accession | GSM391023
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | GCRMA normalization using R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391023/suppl/GSM391023.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391024 | GPL1261 |
|
mouse erythroleukemia_wild type_replicate 3, GCRMA
|
MEL, wild type
|
cell type: mouse erythroleukemia
|
wild type
|
| Sample_geo_accession | GSM391024
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | GCRMA normalization using R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391024/suppl/GSM391024.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391025 | GPL1261 |
|
mouse erythroleukemia_G9a knockdown_replicate 1, GCRMA
|
MEL, G9a knockdown
|
cell type: mouse erythroleukemia
|
G9a knockdown
|
| Sample_geo_accession | GSM391025
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | GCRMA normalization using R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391025/suppl/GSM391025.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391026 | GPL1261 |
|
mouse erythroleukemia_G9a knockdown_replicate 2, GCRMA
|
MEL, G9a knockdown
|
cell type: mouse erythroleukemia
|
G9a knockdown
|
| Sample_geo_accession | GSM391026
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | GCRMA normalization using R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391026/suppl/GSM391026.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
| | |
|
GSM391027 | GPL1261 |
|
mouse erythroleukemia_G9a knockdown_replicate 3, GCRMA
|
MEL, G9a knockdown
|
cell type: mouse erythroleukemia
|
G9a knockdown
|
| Sample_geo_accession | GSM391027
| | Sample_status | Public on Oct 30 2009
| | Sample_submission_date | Apr 09 2009
| | Sample_last_update_date | Oct 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Knock down was induced by adding 5 micrograms/ml final of Dox in the culture medium.
| | Sample_growth_protocol_ch1 | RPMI medium containing 10% fetal bovine serum; 1% glutamine; penicillin and streptomycin 2% DMSO were added for 4 days to induce erythroid differentiation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted and purified using the RNeasy Mini Kit (Qiagen) including the on-column DNAse I digestion step.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard.
| | Sample_hyb_protocol | Affymetrix standard.
| | Sample_scan_protocol | Affymetrix standard.
| | Sample_data_processing | GCRMA normalization using R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391027/suppl/GSM391027.CEL.gz
| | Sample_series_id | GSE15620
| | Sample_data_row_count | 45101
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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