Search results for the GEO ID: GSE15645  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM391588 | GPL570 |
|
JIA_Active_rep1
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_1
Gene expression data from JIA_Active_rep1
|
| Sample_geo_accession | GSM391588
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391588/suppl/GSM391588.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391589 | GPL570 |
|
JIA_Active_rep2
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_2
Gene expression data from JIA_Active_rep2
|
| Sample_geo_accession | GSM391589
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391589/suppl/GSM391589.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391590 | GPL570 |
|
JIA_Active_rep3
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_3
Gene expression data from JIA_Active_rep3
|
| Sample_geo_accession | GSM391590
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391590/suppl/GSM391590.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391591 | GPL570 |
|
JIA_Active_rep4
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_4
Gene expression data from JIA_Active_rep4
|
| Sample_geo_accession | GSM391591
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391591/suppl/GSM391591.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391592 | GPL570 |
|
JIA_Active_rep5
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_5
Gene expression data from JIA_Active_rep5
|
| Sample_geo_accession | GSM391592
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391592/suppl/GSM391592.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391593 | GPL570 |
|
JIA_Active_rep6
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_6
Gene expression data from JIA_Active_rep6
|
| Sample_geo_accession | GSM391593
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391593/suppl/GSM391593.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391594 | GPL570 |
|
JIA_Active_rep7
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_7
Gene expression data from JIA_Active_rep7
|
| Sample_geo_accession | GSM391594
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391594/suppl/GSM391594.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391596 | GPL570 |
|
JIA_Active_rep9
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_9
Gene expression data from JIA_Active_rep9
|
| Sample_geo_accession | GSM391596
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391596/suppl/GSM391596.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391597 | GPL570 |
|
JIA_Active_rep10
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_10
Gene expression data from JIA_Active_rep10
|
| Sample_geo_accession | GSM391597
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391597/suppl/GSM391597.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391598 | GPL570 |
|
JIA_Active_rep11
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_11
Gene expression data from JIA_Active_rep11
|
| Sample_geo_accession | GSM391598
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391598/suppl/GSM391598.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391599 | GPL570 |
|
JIA_Active_rep12
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_12
Gene expression data from JIA_Active_rep12
|
| Sample_geo_accession | GSM391599
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391599/suppl/GSM391599.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391600 | GPL570 |
|
JIA_Active_rep13
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_13
Gene expression data from JIA_Active_rep13
|
| Sample_geo_accession | GSM391600
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391600/suppl/GSM391600.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391601 | GPL570 |
|
JIA_Active_rep14
|
PBMC
|
disease state: polyarticular JIA
symptom: active
cell type: PBMC
|
patient_active_14
Gene expression data from JIA_Active_rep14
|
| Sample_geo_accession | GSM391601
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391601/suppl/GSM391601.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391602 | GPL570 |
|
JIA_CRM_rep1
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_1
Gene expression data from JIA_CRM_rep1
|
| Sample_geo_accession | GSM391602
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391602/suppl/GSM391602.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391603 | GPL570 |
|
JIA_CRM_rep2
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_2
Gene expression data from JIA_CRM_rep2
|
| Sample_geo_accession | GSM391603
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391603/suppl/GSM391603.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391604 | GPL570 |
|
JIA_CRM_rep3
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_3
Gene expression data from JIA_CRM_rep3
|
| Sample_geo_accession | GSM391604
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391604/suppl/GSM391604.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391605 | GPL570 |
|
JIA_CRM_rep4
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_4
Gene expression data from JIA_CRM_rep4
|
| Sample_geo_accession | GSM391605
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391605/suppl/GSM391605.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391606 | GPL570 |
|
JIA_CRM_rep5
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_5
Gene expression data from JIA_CRM_rep5
|
| Sample_geo_accession | GSM391606
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391606/suppl/GSM391606.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391607 | GPL570 |
|
JIA_CRM_rep6
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_6
Gene expression data from JIA_CRM_rep6
|
| Sample_geo_accession | GSM391607
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391607/suppl/GSM391607.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391608 | GPL570 |
|
JIA_CRM_rep7
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_7
Gene expression data from JIA_CRM_rep7
|
| Sample_geo_accession | GSM391608
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391608/suppl/GSM391608.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391609 | GPL570 |
|
JIA_CRM_rep8
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_8
Gene expression data from JIA_CRM_rep8
|
| Sample_geo_accession | GSM391609
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391609/suppl/GSM391609.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391610 | GPL570 |
|
JIA_CRM_rep9
|
PBMC
|
disease state: polyarticular JIA
symptom: CRM
cell type: PBMC
|
patient_CRM_9
Gene expression data from JIA_CRM_rep9
|
| Sample_geo_accession | GSM391610
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391610/suppl/GSM391610.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391611 | GPL570 |
|
JIA_CR_rep1
|
PBMC
|
disease state: polyarticular JIA
symptom: CR
cell type: PBMC
|
patient_CR_1
Gene expression data from JIA_CR_rep1
|
| Sample_geo_accession | GSM391611
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391611/suppl/GSM391611.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391612 | GPL570 |
|
JIA_CR_rep2
|
PBMC
|
disease state: polyarticular JIA
symptom: CR
cell type: PBMC
|
patient_CR_2
Gene expression data from JIA_CR_rep2
|
| Sample_geo_accession | GSM391612
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391612/suppl/GSM391612.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391613 | GPL570 |
|
JIA_CR_rep3
|
PBMC
|
disease state: polyarticular JIA
symptom: CR
cell type: PBMC
|
patient_CR_3
Gene expression data from JIA_CR_rep3
|
| Sample_geo_accession | GSM391613
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391613/suppl/GSM391613.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391614 | GPL570 |
|
JIA_CR_rep4
|
PBMC
|
disease state: polyarticular JIA
symptom: CR
cell type: PBMC
|
patient_CR_4
Gene expression data from JIA_CR_rep4
|
| Sample_geo_accession | GSM391614
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391614/suppl/GSM391614.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391615 | GPL570 |
|
JIA_CR_rep5
|
PBMC
|
disease state: polyarticular JIA
symptom: CR
cell type: PBMC
|
patient_CR_5
Gene expression data from JIA_CR_rep5
|
| Sample_geo_accession | GSM391615
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391615/suppl/GSM391615.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391616 | GPL570 |
|
JIA_CR_rep6
|
PBMC
|
disease state: polyarticular JIA
symptom: CR
cell type: PBMC
|
patient_CR_6
Gene expression data from JIA_CR_rep6
|
| Sample_geo_accession | GSM391616
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391616/suppl/GSM391616.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391617 | GPL570 |
|
Control_rep1
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_1
Gene expression data from Control_rep1
|
| Sample_geo_accession | GSM391617
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391617/suppl/GSM391617.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391618 | GPL570 |
|
Control_rep2
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_2
Gene expression data from Control_rep2
|
| Sample_geo_accession | GSM391618
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391618/suppl/GSM391618.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391619 | GPL570 |
|
Control_rep3
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_3
Gene expression data from Control_rep3
|
| Sample_geo_accession | GSM391619
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391619/suppl/GSM391619.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391620 | GPL570 |
|
Control_rep4
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_4
Gene expression data from Control_rep4
|
| Sample_geo_accession | GSM391620
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391620/suppl/GSM391620.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391621 | GPL570 |
|
Control_rep5
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_5
Gene expression data from Control_rep5
|
| Sample_geo_accession | GSM391621
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391621/suppl/GSM391621.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391622 | GPL570 |
|
Control_rep6
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_6
Gene expression data from Control_rep6
|
| Sample_geo_accession | GSM391622
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391622/suppl/GSM391622.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391623 | GPL570 |
|
Control_rep7
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_7
Gene expression data from Control_rep7
|
| Sample_geo_accession | GSM391623
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391623/suppl/GSM391623.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391624 | GPL570 |
|
Control_rep8
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_8
Gene expression data from Control_rep8
|
| Sample_geo_accession | GSM391624
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391624/suppl/GSM391624.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391625 | GPL570 |
|
Control_rep9
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_9
Gene expression data from Control_rep9
|
| Sample_geo_accession | GSM391625
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391625/suppl/GSM391625.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391626 | GPL570 |
|
Control_rep10
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_10
Gene expression data from Control_rep10
|
| Sample_geo_accession | GSM391626
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391626/suppl/GSM391626.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391627 | GPL570 |
|
Control_rep11
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_11
Gene expression data from Control_rep11
|
| Sample_geo_accession | GSM391627
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391627/suppl/GSM391627.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391628 | GPL570 |
|
Control_rep12
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_12
Gene expression data from Control_rep12
|
| Sample_geo_accession | GSM391628
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391628/suppl/GSM391628.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
| | |
|
GSM391629 | GPL570 |
|
Control_rep13
|
PBMC
|
disease state: control
symptom: control
cell type: PBMC
|
control_13
Gene expression data from Control_rep13
|
| Sample_geo_accession | GSM391629
| | Sample_status | Public on Apr 13 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Blood was collected in BD CPT tubes, PBMC isolated after density gradient centrifugation
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol reagent (Invitrogen) then RNEasy minicolumn (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | per Affymetrix
| | Sample_hyb_protocol | per Affymetrix
| | Sample_scan_protocol | per Affymetrix
| | Sample_data_processing | Preprocessing of Affymetrix array data was performed in the R/Bioconductor package Affy. The raw Affymetrix Perfect Match probes were normalized by the robust multichip analysis method combined with median polish. The marginal data distributions were adjusted through quantile normalization. The resulting normalized values were imported into JMP Genomics software version 3.2, where they were then log transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bart,,Frank
| | Sample_contact_email | frank@omrf.org
| | Sample_contact_institute | OMRF
| | Sample_contact_address | 825 NE 13 St
| | Sample_contact_city | Oklahoma City
| | Sample_contact_state | OK
| | Sample_contact_zip/postal_code | 73103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391629/suppl/GSM391629.CEL.gz
| | Sample_series_id | GSE15645
| | Sample_data_row_count | 54675
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