Search results for the GEO ID: GSE15653  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM391693 | GPL96 |
|
Liver_Lean_rep1
|
liver
|
gender: Female
age: 52
body mass index (kg/m2): na
hemoglobin a1c: 5.6
fasting glucose: 105.0
fasting insulin: 9.3
si: na
sg: na
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of lean subject
|
| Sample_geo_accession | GSM391693
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391693/suppl/GSM391693.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391694 | GPL96 |
|
Liver_Lean_rep2
|
liver
|
gender: Female
age: 26
body mass index (kg/m2): 21.4
hemoglobin a1c: 4.8
fasting glucose: 76.0
fasting insulin: 2.1
si: na
sg: na
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of lean subject
|
| Sample_geo_accession | GSM391694
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391694/suppl/GSM391694.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391695 | GPL96 |
|
Liver_Lean_rep3
|
liver
|
gender: Female
age: 43
body mass index (kg/m2): 29.9
hemoglobin a1c: 5.1
fasting glucose: 78.0
fasting insulin: 1.8
si: na
sg: na
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of lean subject
|
| Sample_geo_accession | GSM391695
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391695/suppl/GSM391695.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391696 | GPL96 |
|
Liver_Lean_rep4
|
liver
|
gender: Female
age: 25
body mass index (kg/m2): 25.5
hemoglobin a1c: 5.0
fasting glucose: 94.5
fasting insulin: 14.8
si: na
sg: na
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of lean subject
|
| Sample_geo_accession | GSM391696
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391696/suppl/GSM391696.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391697 | GPL96 |
|
Liver_Lean_rep5
|
liver
|
gender: Female
age: 35
body mass index (kg/m2): 18.9
hemoglobin a1c: 5.4
fasting glucose: 74.0
fasting insulin: 3.4
si: na
sg: na
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of lean subject
|
| Sample_geo_accession | GSM391697
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391697/suppl/GSM391697.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391698 | GPL96 |
|
Liver_Obese_noDM_rep1
|
liver
|
gender: Female
age: 52
body mass index (kg/m2): 45.7
hemoglobin a1c: 5.3
fasting glucose: 85.8
fasting insulin: 5.5
si: 2.6
sg: 0.0139
cholesterol: 196.0
triglycerides: 71.0
hdl: 49.0
|
Gene expression from liver of obese subject without diabetes
|
| Sample_geo_accession | GSM391698
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391698/suppl/GSM391698.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391699 | GPL96 |
|
Liver_Obese_noDM_rep2
|
liver
|
gender: Female
age: 42
body mass index (kg/m2): 56.2
hemoglobin a1c: 5.0
fasting glucose: 100.5
fasting insulin: 52.2
si: 0.2
sg: 0.0175
cholesterol: 202.0
triglycerides: 154.0
hdl: 40.0
|
Gene expression from liver of obese subject without diabetes
|
| Sample_geo_accession | GSM391699
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391699/suppl/GSM391699.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391700 | GPL96 |
|
Liver_Obese_noDM_rep3
|
liver
|
gender: Male
age: 36
body mass index (kg/m2): 50.9
hemoglobin a1c: 5.2
fasting glucose: 78.5
fasting insulin: 16.0
si: 0.0
sg: 0.0187
cholesterol: 121.0
triglycerides: 69.0
hdl: 40.0
|
Gene expression from liver of obese subject without diabetes
|
| Sample_geo_accession | GSM391700
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391700/suppl/GSM391700.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391701 | GPL96 |
|
Liver_Obese_noDM_rep4
|
liver
|
gender: Female
age: 26
body mass index (kg/m2): 53.3
hemoglobin a1c: 5.1
fasting glucose: 85.0
fasting insulin: 12.9
si: na
sg: na
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of obese subject without diabetes
|
| Sample_geo_accession | GSM391701
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391701/suppl/GSM391701.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391702 | GPL96 |
|
Liver_Obese_DM_well-controlled_rep1
|
liver
|
gender: Female
age: 31
body mass index (kg/m2): 53.5
hemoglobin a1c: 5.6
fasting glucose: 111.0
fasting insulin: 40.7
si: 0.0
sg: 0.0193
cholesterol: 204.0
triglycerides: 153.0
hdl: 39.0
|
Gene expression from liver of obese subject with diabetes, well-controlled
|
| Sample_geo_accession | GSM391702
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391702/suppl/GSM391702.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391703 | GPL96 |
|
Liver_Obese_DM_well-controlled_rep2
|
liver
|
gender: Male
age: 47
body mass index (kg/m2): 55.3
hemoglobin a1c: 7.0
fasting glucose: 190.0
fasting insulin: 2.7
si: na
sg: na
cholesterol: 143.0
triglycerides: 303.0
hdl: 27.0
|
Gene expression from liver of obese subject with diabetes, well-controlled
|
| Sample_geo_accession | GSM391703
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391703/suppl/GSM391703.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391704 | GPL96 |
|
Liver_Obese_DM_well-controlled_rep3
|
liver
|
gender: Female
age: 54
body mass index (kg/m2): 57.9
hemoglobin a1c: 6.3
fasting glucose: 160.5
fasting insulin: 33.0
si: 0.3
sg: 0.0165
cholesterol: 175.0
triglycerides: 89.0
hdl: 48.0
|
Gene expression from liver of obese subject with diabetes, well-controlled
|
| Sample_geo_accession | GSM391704
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391704/suppl/GSM391704.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391705 | GPL96 |
|
Liver_Obese_DM_well-controlled_rep4
|
liver
|
gender: Female
age: 49
body mass index (kg/m2): 38.2
hemoglobin a1c: 6.1
fasting glucose: 151.0
fasting insulin: 54.8
si: na
sg: na
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of obese subject with diabetes, well-controlled
|
| Sample_geo_accession | GSM391705
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391705/suppl/GSM391705.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391706 | GPL96 |
|
Liver_Obese_DM_well-controlled_rep5
|
liver
|
gender: Female
age: 63
body mass index (kg/m2): 46.6
hemoglobin a1c: 6.0
fasting glucose: 103.0
fasting insulin: 4.1
si: na
sg: na
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of obese subject with diabetes, well-controlled
|
| Sample_geo_accession | GSM391706
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391706/suppl/GSM391706.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391707 | GPL96 |
|
Liver_Obese_DM_poorly-controlled_rep1
|
liver
|
gender: Male
age: 56
body mass index (kg/m2): 51.6
hemoglobin a1c: 9.3
fasting glucose: 193.3
fasting insulin: 17.2
si: 0.3
sg: 0.1230
cholesterol: 161.0
triglycerides: 306.0
hdl: 42.0
|
Gene expression from liver of obese subject with diabetes, poorly-controlled
|
| Sample_geo_accession | GSM391707
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391707/suppl/GSM391707.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391708 | GPL96 |
|
Liver_Obese_DM_poorly-controlled_rep2
|
liver
|
gender: Female
age: 36
body mass index (kg/m2): 57.6
hemoglobin a1c: 8.8
fasting glucose: 134.3
fasting insulin: 106.6
si: 0.0
sg: 0.0000
cholesterol: na
triglycerides: na
hdl: na
|
Gene expression from liver of obese subject with diabetes, poorly-controlled
|
| Sample_geo_accession | GSM391708
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391708/suppl/GSM391708.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391709 | GPL96 |
|
Liver_Obese_DM_poorly-controlled_rep3
|
liver
|
gender: Male
age: 26
body mass index (kg/m2): 59.4
hemoglobin a1c: 10.4
fasting glucose: 306.0
fasting insulin: 95.0
si: na
sg: na
cholesterol: 199.0
triglycerides: 162.0
hdl: 45.0
|
Gene expression from liver of obese subject with diabetes, poorly-controlled
|
| Sample_geo_accession | GSM391709
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391709/suppl/GSM391709.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
GSM391710 | GPL96 |
|
Liver_Obese_DM_poorly-controlled_rep4
|
liver
|
gender: Female
age: 53
body mass index (kg/m2): 51.5
hemoglobin a1c: 11.2
fasting glucose: na
fasting insulin: na
si: na
sg: na
cholesterol: 162
triglycerides: 102.0
hdl: 50
|
Gene expression from liver of obese subject with diabetes, poorly-controlled
|
| Sample_geo_accession | GSM391710
| | Sample_status | Public on Jun 01 2009
| | Sample_submission_date | Apr 13 2009
| | Sample_last_update_date | Apr 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | 15ug of biotinylated cRNA were hybridized for 16hr at 45C to the Affymetrix GeneChip Human Genome U133A array. Following hybridization, arrays were washed and stained on the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneArray Scanner G2500.
| | Sample_data_processing | Data were analyzed using Affymetrix GCOS v.1.3, MAS5.0 algorithm, and globally scaled with the trimmed mean target intensity set to 1500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Mary Elizabeth,,Patti
| | Sample_contact_email | mary.elizabeth.patti@joslin.harvard.edu
| | Sample_contact_phone | 6177351966
| | Sample_contact_fax | 6177322593
| | Sample_contact_department | Research Division
| | Sample_contact_institute | Joslin Diabetes Center
| | Sample_contact_address | 1 Joslin Place
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM391nnn/GSM391710/suppl/GSM391710.CEL.gz
| | Sample_series_id | GSE15653
| | Sample_data_row_count | 22283
| | |
|
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