Search results for the GEO ID: GSE15749  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM394765 | GPL570 |
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MCF-7 cells, biological rep1
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MCF-7 cells
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tissue: breast cancer cell line
genotype: ERa-positive
treatment: control
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Gene expression data from MCF-7 Ctrl-1 sample.
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| Sample_geo_accession | GSM394765
| | Sample_status | Public on Dec 31 2011
| | Sample_submission_date | Apr 20 2009
| | Sample_last_update_date | Dec 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | cRNA were hybridized to the Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and robust multichip averaging RMA as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pei-Yin,,Hsu
| | Sample_contact_institute | OSU
| | Sample_contact_address | BRT836, 460W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43220
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM394nnn/GSM394765/suppl/GSM394765.CEL.gz
| | Sample_series_id | GSE15749
| | Sample_data_row_count | 2160
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GSM394766 | GPL570 |
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MCF-7 cells, biological rep2
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MCF-7 cells
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tissue: breast cancer cell line
genotype: ERa-positive
treatment: control
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Gene expression data from MCF-7 Ctrl-2 sample.
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| Sample_geo_accession | GSM394766
| | Sample_status | Public on Dec 31 2011
| | Sample_submission_date | Apr 20 2009
| | Sample_last_update_date | Dec 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | cRNA were hybridized to the Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and robust multichip averaging RMA as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pei-Yin,,Hsu
| | Sample_contact_institute | OSU
| | Sample_contact_address | BRT836, 460W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43220
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM394nnn/GSM394766/suppl/GSM394766.CEL.gz
| | Sample_series_id | GSE15749
| | Sample_data_row_count | 2160
| | |
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GSM394767 | GPL570 |
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MCF-7 cells with miR-9 transfection
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MCF-7 cells
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tissue: breast cancer cell line
genotype: ERa-positive
treatment: miR-9 transfection
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Gene expression data from the miR-9 transfectant
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| Sample_geo_accession | GSM394767
| | Sample_status | Public on Dec 16 2011
| | Sample_submission_date | Apr 20 2009
| | Sample_last_update_date | Dec 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | cRNA were hybridized to the Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and robust multichip averaging RMA as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pei-Yin,,Hsu
| | Sample_contact_institute | OSU
| | Sample_contact_address | BRT836, 460W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43220
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM394nnn/GSM394767/suppl/GSM394767.CEL.gz
| | Sample_series_id | GSE15749
| | Sample_data_row_count | 2160
| | |
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GSM394768 | GPL570 |
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MCF-7 cells with miR-9* transfection
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MCF-7 cells
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tissue: breast cancer cell line
genotype: ERa-positive
treatment: miR-9* transfection
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Gene expression data from the miR-9* transfectant
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| Sample_geo_accession | GSM394768
| | Sample_status | Public on Dec 16 2011
| | Sample_submission_date | Apr 20 2009
| | Sample_last_update_date | Dec 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | cRNA were hybridized to the Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and robust multichip averaging RMA as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pei-Yin,,Hsu
| | Sample_contact_institute | OSU
| | Sample_contact_address | BRT836, 460W 12th Ave
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43220
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM394nnn/GSM394768/suppl/GSM394768.CEL.gz
| | Sample_series_id | GSE15749
| | Sample_data_row_count | 2160
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