Search results for the GEO ID: GSE15792  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM396489 | GPL570 |
|
PCARNEQ siRNA_rep1
|
LNCaP cells treated with siRNA to PCARNEQ_1
|
cell line: Prostate cancer cell line LNCaP
treatment: siPCARNEQ
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hidewaki_si8q24_1.CEL
|
| Sample_geo_accession | GSM396489
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Apr 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted uisng Trizol (Invitrogen) according to the manufacturer's protocol and then purified with Qiagne's Rneasy column.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human U133 plus 2.0 GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Probe signal intensities were normalized by RMA and Quantile normalization methods (using R and Bioconductor).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hidewaki,,Nakaagwa
| | Sample_contact_email | hidewaki@ims.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5449-5375
| | Sample_contact_fax | +81-3-5449-5124
| | Sample_contact_laboratory | Laboratory of Molecular Medicine
| | Sample_contact_department | Institute of Medical Science
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 4-6-1 Shirokanedai, Minato-ku,
| | Sample_contact_city | Tokyo
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8639
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396489/suppl/GSM396489.CEL.gz
| | Sample_series_id | GSE15792
| | Sample_data_row_count | 54675
| | |
|
GSM396490 | GPL570 |
|
PCARNEQ siRNA_rep2
|
LNCaP cells treated with siRNA to PCARNEQ_2
|
cell line: Prostate cancer cell line LNCaP
treatment: siPCARNEQ
|
hidewaki_si8q24_2.CEL
|
| Sample_geo_accession | GSM396490
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Apr 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted uisng Trizol (Invitrogen) according to the manufacturer's protocol and then purified with Qiagne's Rneasy column.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human U133 plus 2.0 GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Probe signal intensities were normalized by RMA and Quantile normalization methods (using R and Bioconductor).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hidewaki,,Nakaagwa
| | Sample_contact_email | hidewaki@ims.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5449-5375
| | Sample_contact_fax | +81-3-5449-5124
| | Sample_contact_laboratory | Laboratory of Molecular Medicine
| | Sample_contact_department | Institute of Medical Science
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 4-6-1 Shirokanedai, Minato-ku,
| | Sample_contact_city | Tokyo
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8639
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396490/suppl/GSM396490.CEL.gz
| | Sample_series_id | GSE15792
| | Sample_data_row_count | 54675
| | |
|
GSM396491 | GPL570 |
|
PCARNEQ siRNA_rep3
|
LNCaP cells treated with siRNA to PCARNEQ_3
|
cell line: Prostate cancer cell line LNCaP
treatment: siPCARNEQ
|
hidewaki_si8q24_3.CEL
|
| Sample_geo_accession | GSM396491
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Apr 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted uisng Trizol (Invitrogen) according to the manufacturer's protocol and then purified with Qiagne's Rneasy column.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human U133 plus 2.0 GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Probe signal intensities were normalized by RMA and Quantile normalization methods (using R and Bioconductor).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hidewaki,,Nakaagwa
| | Sample_contact_email | hidewaki@ims.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5449-5375
| | Sample_contact_fax | +81-3-5449-5124
| | Sample_contact_laboratory | Laboratory of Molecular Medicine
| | Sample_contact_department | Institute of Medical Science
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 4-6-1 Shirokanedai, Minato-ku,
| | Sample_contact_city | Tokyo
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8639
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396491/suppl/GSM396491.CEL.gz
| | Sample_series_id | GSE15792
| | Sample_data_row_count | 54675
| | |
|
GSM396492 | GPL570 |
|
Control siRNA_rep1
|
LNCaP cells treated with siRNA to EGFP_1
|
cell line: Prostate cancer cell line LNCaP
treatment: siEGFP
|
hidewaki_siEGFP_1.CEL
|
| Sample_geo_accession | GSM396492
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Apr 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted uisng Trizol (Invitrogen) according to the manufacturer's protocol and then purified with Qiagne's Rneasy column.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human U133 plus 2.0 GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Probe signal intensities were normalized by RMA and Quantile normalization methods (using R and Bioconductor).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hidewaki,,Nakaagwa
| | Sample_contact_email | hidewaki@ims.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5449-5375
| | Sample_contact_fax | +81-3-5449-5124
| | Sample_contact_laboratory | Laboratory of Molecular Medicine
| | Sample_contact_department | Institute of Medical Science
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 4-6-1 Shirokanedai, Minato-ku,
| | Sample_contact_city | Tokyo
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8639
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396492/suppl/GSM396492.CEL.gz
| | Sample_series_id | GSE15792
| | Sample_data_row_count | 54675
| | |
|
GSM396493 | GPL570 |
|
Control siRNA_rep2
|
LNCaP cells treated with siRNA to EGFP_2
|
cell line: Prostate cancer cell line LNCaP
treatment: siEGFP
|
hidewaki_siEGFP_2.CEL
|
| Sample_geo_accession | GSM396493
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Apr 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted uisng Trizol (Invitrogen) according to the manufacturer's protocol and then purified with Qiagne's Rneasy column.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human U133 plus 2.0 GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Probe signal intensities were normalized by RMA and Quantile normalization methods (using R and Bioconductor).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hidewaki,,Nakaagwa
| | Sample_contact_email | hidewaki@ims.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5449-5375
| | Sample_contact_fax | +81-3-5449-5124
| | Sample_contact_laboratory | Laboratory of Molecular Medicine
| | Sample_contact_department | Institute of Medical Science
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 4-6-1 Shirokanedai, Minato-ku,
| | Sample_contact_city | Tokyo
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8639
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396493/suppl/GSM396493.CEL.gz
| | Sample_series_id | GSE15792
| | Sample_data_row_count | 54675
| | |
|
GSM396494 | GPL570 |
|
Control siRNA_rep3
|
LNCaP cells treated with siRNA to EGFP_3
|
cell line: Prostate cancer cell line LNCaP
treatment: siEGFP
|
hidewaki_siEGFP_3.CEL
|
| Sample_geo_accession | GSM396494
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Apr 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted uisng Trizol (Invitrogen) according to the manufacturer's protocol and then purified with Qiagne's Rneasy column.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human U133 plus 2.0 GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Probe signal intensities were normalized by RMA and Quantile normalization methods (using R and Bioconductor).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hidewaki,,Nakaagwa
| | Sample_contact_email | hidewaki@ims.u-tokyo.ac.jp
| | Sample_contact_phone | +81-3-5449-5375
| | Sample_contact_fax | +81-3-5449-5124
| | Sample_contact_laboratory | Laboratory of Molecular Medicine
| | Sample_contact_department | Institute of Medical Science
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 4-6-1 Shirokanedai, Minato-ku,
| | Sample_contact_city | Tokyo
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8639
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396494/suppl/GSM396494.CEL.gz
| | Sample_series_id | GSE15792
| | Sample_data_row_count | 54675
| | |
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