Search results for the GEO ID: GSE15799  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM396550 | GPL570 |
|
vcontrol 1
|
HT29 human colon adenocarcinoma cell line sample
|
cell line: HT29
treatment: control
|
Gene expression data from HT29 colon adenocarcinoma cell line
|
| Sample_geo_accession | GSM396550
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Mar 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396550/suppl/GSM396550.CEL.gz
| | Sample_series_id | GSE15799
| | Sample_data_row_count | 54675
| | |
|
GSM396551 | GPL570 |
|
vcontrol 2
|
HT29 human colon adenocarcinoma cell line sample
|
cell line: HT29
treatment: control
|
Gene expression data from HT29 colon adenocarcinoma cell line
|
| Sample_geo_accession | GSM396551
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Mar 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396551/suppl/GSM396551.CEL.gz
| | Sample_series_id | GSE15799
| | Sample_data_row_count | 54675
| | |
|
GSM396552 | GPL570 |
|
vcontrol 3
|
HT29 human colon adenocarcinoma cell line sample
|
cell line: HT29
treatment: control
|
Gene expression data from HT29 colon adenocarcinoma cell line
|
| Sample_geo_accession | GSM396552
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Mar 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396552/suppl/GSM396552.CEL.gz
| | Sample_series_id | GSE15799
| | Sample_data_row_count | 54675
| | |
|
GSM396553 | GPL570 |
|
vNS398-treated 1
|
HT29 human colon adenocarcinoma cell line sample
|
cell line: HT29
treatment: NS398-treated
|
Gene expression data from HT29 colon adenocarcinoma cell line
|
| Sample_geo_accession | GSM396553
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Mar 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396553/suppl/GSM396553.CEL.gz
| | Sample_series_id | GSE15799
| | Sample_data_row_count | 54675
| | |
|
GSM396554 | GPL570 |
|
vNS398-treated 2
|
HT29 human colon adenocarcinoma cell line sample
|
cell line: HT29
treatment: NS398-treated
|
Gene expression data from HT29 colon adenocarcinoma cell line
|
| Sample_geo_accession | GSM396554
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Mar 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396554/suppl/GSM396554.CEL.gz
| | Sample_series_id | GSE15799
| | Sample_data_row_count | 54675
| | |
|
GSM396555 | GPL570 |
|
vNS398-treated 3
|
HT29 human colon adenocarcinoma cell line sample
|
cell line: HT29
treatment: NS398-treated
|
Gene expression data from HT29 colon adenocarcinoma cell line
|
| Sample_geo_accession | GSM396555
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Apr 23 2009
| | Sample_last_update_date | Mar 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini extraction of total RNA was performed according to the manufacturer instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| | Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wichmann,,Barna
| | Sample_contact_email | wwbarna@yahoo.com
| | Sample_contact_institute | SOTE
| | Sample_contact_address | Szentkirály
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | 1081
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM396nnn/GSM396555/suppl/GSM396555.CEL.gz
| | Sample_series_id | GSE15799
| | Sample_data_row_count | 54675
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