Search results for the GEO ID: GSE15811  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM397302 | GPL570 |
|
BCR/FGFR1 biological replicate 1
|
Human CD34+ cord blood cells expressing BCR/FGFR1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: BCR/FGFR1
biological replicate: 1
|
Gene expression profile of human CD34+ cord blood cells expressing BCR/FGFR1
|
| Sample_geo_accession | GSM397302
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397302/suppl/GSM397302.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397302/suppl/GSM397302.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397303 | GPL570 |
|
MIG control biological replicate 1
|
Human CD34+ cord blood cells expressing the empty MIG control vector
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: MIG control
biological replicate: 1
|
Gene expression profile of human CD34+ cord blood cells expressing the empty MIG control vector
|
| Sample_geo_accession | GSM397303
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397303/suppl/GSM397303.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397303/suppl/GSM397303.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397304 | GPL570 |
|
BCR/ABL1 biological replicate 1
|
Human CD34+ cord blood cells expressing BCR/ABL1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: BCR/ABL1
biological replicate: 1
|
Gene expression profile of human CD34+ cord blood cells expressing BCR/ABL1
|
| Sample_geo_accession | GSM397304
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397304/suppl/GSM397304.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397304/suppl/GSM397304.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397305 | GPL570 |
|
ZMYM2/FGFR1 biological replicate 1
|
Human CD34+ cord blood cells expressing ZMYM2/FGFR1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: ZMYM2/FGFR1
biological replicate: 1
|
Gene expression profile of human CD34+ cord blood cells expressing ZMYM2/FGFR1
|
| Sample_geo_accession | GSM397305
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397305/suppl/GSM397305.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397305/suppl/GSM397305.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397306 | GPL570 |
|
BCR/FGFR1 biological replicate 2
|
Human CD34+ cord blood cells expressing BCR/FGFR1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: BCR/FGFR1
biological replicate: 2
|
Gene expression profile of human CD34+ cord blood cells expressing BCR/FGFR1
|
| Sample_geo_accession | GSM397306
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397306/suppl/GSM397306.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397306/suppl/GSM397306.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397307 | GPL570 |
|
MIG control biological replicate 2
|
Human CD34+ cord blood cells expressing the empty MIG control vector
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: MIG control
biological replicate: 2
|
Gene expression profile of human CD34+ cord blood cells expressing the empty MIG control vector
|
| Sample_geo_accession | GSM397307
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397307/suppl/GSM397307.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397307/suppl/GSM397307.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397308 | GPL570 |
|
BCR/ABL1 biological replicate 2
|
Human CD34+ cord blood cells expressing BCR/ABL1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: BCR/ABL1
biological replicate: 2
|
Gene expression profile of human CD34+ cord blood cells expressing BCR/ABL1
|
| Sample_geo_accession | GSM397308
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397308/suppl/GSM397308.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397308/suppl/GSM397308.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397309 | GPL570 |
|
ZMYM2/FGFR1 biological replicate 2
|
Human CD34+ cord blood cells expressing ZMYM2/FGFR1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: ZMYM2/FGFR1
biological replicate: 2
|
Gene expression profile of human CD34+ cord blood cells expressing ZMYM2/FGFR1
|
| Sample_geo_accession | GSM397309
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397309/suppl/GSM397309.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397309/suppl/GSM397309.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397310 | GPL570 |
|
BCR/FGFR1 biological replicate 3
|
Human CD34+ cord blood cells expressing BCR/FGFR1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: BCR/FGFR1
biological replicate: 3
|
Gene expression profile of human CD34+ cord blood cells expressing BCR/FGFR1
|
| Sample_geo_accession | GSM397310
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397310/suppl/GSM397310.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397310/suppl/GSM397310.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397311 | GPL570 |
|
MIG control biological replicate 3
|
Human CD34+ cord blood cells expressing the empty MIG control vector
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: MIG control
biological replicate: 3
|
Gene expression profile of human CD34+ cord blood cells expressing the empty MIG control vector
|
| Sample_geo_accession | GSM397311
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397311/suppl/GSM397311.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397311/suppl/GSM397311.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397312 | GPL570 |
|
BCR/ABL1 biological replicate 3
|
Human CD34+ cord blood cells expressing BCR/ABL1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: BCR/ABL1
biological replicate: 3
|
Gene expression profile of human CD34+ cord blood cells expressing BCR/ABL1
|
| Sample_geo_accession | GSM397312
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397312/suppl/GSM397312.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397312/suppl/GSM397312.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
GSM397313 | GPL570 |
|
ZMYM2/FGFR1 biological replicate 3
|
Human CD34+ cord blood cells expressing ZMYM2/FGFR1
|
cell source: Human CD34+ cells isolated from umbilical cord blood
agent: ZMYM2/FGFR1
biological replicate: 3
|
Gene expression profile of human CD34+ cord blood cells expressing ZMYM2/FGFR1
|
| Sample_geo_accession | GSM397313
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 24 2009
| | Sample_last_update_date | Jun 26 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the RNeasy isolation kit (Qiagen, Valencia, CA) according to the manufacturers’ instructions. RNA quality was assessed using a Bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Gene Expression Analysis Technical Manual 701021 rev.5).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Gene Chip Human Gene U133 plus 2.0 microarrays. GeneChips were washed and stained in the Affymetrix Fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GSC3000.
| | Sample_data_processing | Normalization was performed using the RMA method in Gene Chip Operating Software and the obtained data matrix was imported into the TIGR Multi Experiment Viewer for further analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Helena,,Ågerstam
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Lund University Hospital
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | SE-22158
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397313/suppl/GSM397313.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM397nnn/GSM397313/suppl/GSM397313.chp.gz
| | Sample_series_id | GSE15811
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
