Search results for the GEO ID: GSE15856  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM398196 | GPL1355 |
|
Cardiomyocytes_Non-pulsed_20081009
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: untreated
|
Cardiomyocytes_Non-pulsed_20081009.CEL
|
| Sample_geo_accession | GSM398196
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398196/suppl/GSM398196.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398197 | GPL1355 |
|
Cardiomyocytes_Pulsed_20081009
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: Electrical stimulated for 3 days at 1Hz, 2 Volt/cm
|
Cardiomyocytes_Pulsed_20081009.CEL
|
| Sample_geo_accession | GSM398197
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398197/suppl/GSM398197.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398198 | GPL1355 |
|
Cardiomyocytes_Non-pulsed_20090131
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: untreated
|
Cardiomyocytes_Non-pulsed_20090131.CEL
|
| Sample_geo_accession | GSM398198
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398198/suppl/GSM398198.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398199 | GPL1355 |
|
Cardiomyocytes_Pulsed_20090131
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: Electrical stimulated for 3 days at 1Hz, 2 Volt/cm
|
Cardiomyocytes_Pulsed_20090131.CEL
|
| Sample_geo_accession | GSM398199
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398199/suppl/GSM398199.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398200 | GPL1355 |
|
Cardiomyocytes_Pulsed-Blebbistatin_20090131
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: Electrical stimulated for 3 days at 1Hz, 2 Volt/cm;Supplemented with blebbistatin 10 µmole/L
|
Cardiomyocytes_Pulsed-Blebbistatin_20090131.CEL
|
| Sample_geo_accession | GSM398200
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398200/suppl/GSM398200.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398201 | GPL1355 |
|
Cardiomyocytes_Non-pulsed_20090207
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: untreated
|
Cardiomyocytes_Non-pulsed_20090207.CEL
|
| Sample_geo_accession | GSM398201
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398201/suppl/GSM398201.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398202 | GPL1355 |
|
Cardiomyocytes_Pulsed_20090207
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: Electrical stimulated for 3 days at 1Hz, 2 Volt/cm
|
Cardiomyocytes_Pulsed_20090207.CEL
|
| Sample_geo_accession | GSM398202
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398202/suppl/GSM398202.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398203 | GPL1355 |
|
Cardiomyocytes_Pulsed-Blebbistatin_20090207
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: Electrical stimulated for 3 days at 1Hz, 2 Volt/cm;Supplemented with blebbistatin 10 µmole/L
|
Cardiomyocytes_Pulsed-Blebbistatin_20090207.CEL
|
| Sample_geo_accession | GSM398203
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398203/suppl/GSM398203.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398204 | GPL1355 |
|
Cardiomyocytes_Pulsed_20090226
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: Electrical stimulated for 3 days at 1Hz, 2 Volt/cm
|
Cardiomyocytes_Pulsed_20090226.CEL
|
| Sample_geo_accession | GSM398204
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398204/suppl/GSM398204.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
| | |
|
GSM398205 | GPL1355 |
|
Cardiomyocytes_Pulsed-Blebbistatin_20090226
|
Ventricular cardiomyocytes primary culture
|
strain: Lewis
developmental stage: 0-3 days neonatal
treatment: Electrical stimulated for 3 days at 1Hz, 2 Volt/cm;Supplemented with blebbistatin 10 µmole/L
|
Cardiomyocytes_Pulsed-Blebbistatin_20090226.CEL
|
| Sample_geo_accession | GSM398205
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 27 2009
| | Sample_last_update_date | Oct 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA was hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix Gene Chip Scanner 7G
| | Sample_data_processing | Data processed using PLIER in Affymetrix Expression Console V 1.1 with default settings, further processed using BRB-tools (http://linus.nci.nih.gov/BRB-ArrayTools.html): Normalized using housekeeping genes (rat orthologues of housekeeping genes on Affymetrix HG U133 plus 2 array)
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ruben,,Martherus
| | Sample_contact_department | Clinical Genomics
| | Sample_contact_institute | Maastricht University
| | Sample_contact_address | Universiteitssingel 50
| | Sample_contact_city | Maastricht
| | Sample_contact_zip/postal_code | 6200 MD
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM398nnn/GSM398205/suppl/GSM398205.CEL.gz
| | Sample_series_id | GSE15856
| | Sample_data_row_count | 31099
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