Search results for the GEO ID: GSE15903  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM399130 | GPL570 |
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NPC_5-8F (U133 Plus 2.0 Array)
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Nasopharyngeal carcinoma cell line 5-8F
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cell line: nasopharyngeal carcinoma cell line 5-8F
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gene expression analysis
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| Sample_geo_accession | GSM399130
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 29 2009
| | Sample_last_update_date | Apr 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI-1640 medium (Hyclone, Logan, UT) supplemented with 10% fetal calf serum (ExCell, Shanghai, China) and 1% L-glutamine. Cells were cultured at 37°C in a humidified atmosphere of 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using Trizol reagent (Invitrogen, Carlsbad, CA) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix HG U133 Plus 2.0 microarray.
| | Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix HG U133 Plus 2.0 microarray.
| | Sample_scan_protocol | Microarray scanning and data acquisition was carried out at GeneTech Biotechnology Limited Company (Shanghai, China) using Affymetrix-recommended equipment and procedures.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhong-Xi,,Huang
| | Sample_contact_email | huangzhongxi@gmail.com
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | Southern Medical University
| | Sample_contact_address | Tonghe
| | Sample_contact_city | Guangzhou
| | Sample_contact_zip/postal_code | 510515
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399130/suppl/GSM399130.CEL.gz
| | Sample_series_id | GSE15903
| | Sample_data_row_count | 54675
| | |
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GSM399131 | GPL570 |
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NPC_6-10B_rep1 (U133 Plus 2.0 Array)
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Nasopharyngeal carcinoma cell line 6-10B
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cell line: nasopharyngeal carcinoma cell line 6-10B
biological replicate: 1
|
gene expression analysis
Cells are cultured and harvested at three different time points. Thus it is biological repeats.
|
| Sample_geo_accession | GSM399131
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Apr 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI-1640 medium (Hyclone, Logan, UT) supplemented with 10% fetal calf serum (ExCell, Shanghai, China) and 1% L-glutamine. Cells were cultured at 37°C in a humidified atmosphere of 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using Trizol reagent (Invitrogen, Carlsbad, CA) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix HG U133 Plus 2.0 microarray.
| | Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix HG U133 Plus 2.0 microarray.
| | Sample_scan_protocol | Microarray scanning and data acquisition was carried out at GeneTech Biotechnology Limited Company (Shanghai, China) using Affymetrix-recommended equipment and procedures.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhong-Xi,,Huang
| | Sample_contact_email | huangzhongxi@gmail.com
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | Southern Medical University
| | Sample_contact_address | Tonghe
| | Sample_contact_city | Guangzhou
| | Sample_contact_zip/postal_code | 510515
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399131/suppl/GSM399131.CEL.gz
| | Sample_series_id | GSE15903
| | Sample_data_row_count | 54675
| | |
|
GSM399132 | GPL570 |
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NPC_6-10B_rep2 (U133 Plus 2.0 Array)
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Nasopharyngeal carcinoma cell line 6-10B
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cell line: nasopharyngeal carcinoma cell line 6-10B
biological replicate: 2
|
gene expression analysis
Cells are cultured and harvested at three different time points. Thus it is biological repeats.
|
| Sample_geo_accession | GSM399132
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Apr 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI-1640 medium (Hyclone, Logan, UT) supplemented with 10% fetal calf serum (ExCell, Shanghai, China) and 1% L-glutamine. Cells were cultured at 37°C in a humidified atmosphere of 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using Trizol reagent (Invitrogen, Carlsbad, CA) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix HG U133 Plus 2.0 microarray.
| | Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix HG U133 Plus 2.0 microarray.
| | Sample_scan_protocol | Microarray scanning and data acquisition was carried out at GeneTech Biotechnology Limited Company (Shanghai, China) using Affymetrix-recommended equipment and procedures.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhong-Xi,,Huang
| | Sample_contact_email | huangzhongxi@gmail.com
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | Southern Medical University
| | Sample_contact_address | Tonghe
| | Sample_contact_city | Guangzhou
| | Sample_contact_zip/postal_code | 510515
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399132/suppl/GSM399132.CEL.gz
| | Sample_series_id | GSE15903
| | Sample_data_row_count | 54675
| | |
|
GSM399133 | GPL570 |
|
NPC_6-10B_rep3 (U133 Plus 2.0 Array)
|
Nasopharyngeal carcinoma cell line 6-10B
|
cell line: nasopharyngeal carcinoma cell line 6-10B
biological replicate: 3
|
gene expression analysis
Cells are cultured and harvested at three different time points. Thus it is biological repeats.
|
| Sample_geo_accession | GSM399133
| | Sample_status | Public on Dec 10 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Apr 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI-1640 medium (Hyclone, Logan, UT) supplemented with 10% fetal calf serum (ExCell, Shanghai, China) and 1% L-glutamine. Cells were cultured at 37°C in a humidified atmosphere of 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using Trizol reagent (Invitrogen, Carlsbad, CA) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix HG U133 Plus 2.0 microarray.
| | Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix HG U133 Plus 2.0 microarray.
| | Sample_scan_protocol | Microarray scanning and data acquisition was carried out at GeneTech Biotechnology Limited Company (Shanghai, China) using Affymetrix-recommended equipment and procedures.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhong-Xi,,Huang
| | Sample_contact_email | huangzhongxi@gmail.com
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | Southern Medical University
| | Sample_contact_address | Tonghe
| | Sample_contact_city | Guangzhou
| | Sample_contact_zip/postal_code | 510515
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399133/suppl/GSM399133.CEL.gz
| | Sample_series_id | GSE15903
| | Sample_data_row_count | 54675
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