Search results for the GEO ID: GSE15914  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM399497 | GPL1261 |
|
Baylor/Oka/Li et al/12031
|
E4_Aorta_vector control_HDAd-0
|
agent: vector control, HDAd-0
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399497
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399497/suppl/GSM399497.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
|
GSM399499 | GPL1261 |
|
Baylor/Oka/Li et al/12039
|
E3_vector control
|
agent: vector control, HDAd-0
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399499
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399499/suppl/GSM399499.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
|
GSM399501 | GPL1261 |
|
Baylor/Oka/Li et al/12043
|
E5_vector control
|
agent: vector control, HDAd-0
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399501
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399501/suppl/GSM399501.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
|
GSM399502 | GPL1261 |
|
Baylor/Oka/Li et al/12046
|
V2_vector
|
agent: vector, HDAd-gE3
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399502
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399502/suppl/GSM399502.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
|
GSM399503 | GPL1261 |
|
Baylor/Oka/Li et al/12047
|
V3_vector
|
agent: vector, HDAd-gE3
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399503
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399503/suppl/GSM399503.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
|
GSM399504 | GPL1261 |
|
Baylor/Oka/Li et al/12048
|
V4_vector
|
agent: vector, HDAd-gE3
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399504
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399504/suppl/GSM399504.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
|
GSM399506 | GPL1261 |
|
Baylor/Oka/Li et al/12051
|
B1_vehicle_PBS
|
agent: vehicle, PBS
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399506
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399506/suppl/GSM399506.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
|
GSM399507 | GPL1261 |
|
Baylor/Oka/Li et al/12053
|
B3_vehicle
|
agent: vehicle, PBS
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399507
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399507/suppl/GSM399507.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
|
GSM399508 | GPL1261 |
|
Baylor/Oka/Li et al/12054
|
B4_vehicle
|
agent: vehicle, PBS
gender: Female
genotype: APOE-/-
age: 8 weeks
strain: C57BL/6 background
|
No additional
|
| Sample_geo_accession | GSM399508
| | Sample_status | Public on Oct 01 2009
| | Sample_submission_date | Apr 30 2009
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratory
| | Sample_treatment_protocol_ch1 | Mice were fed a diet containing 0.2% (w/w) cholesterol and 10% (v/w) coconut oil to induce atherosclerosis for 30 weeks. Mice were then divided into 3 groups (n=15/group), treated with a tail vein injection of helper-dependent adenovirus expressing human apolipoprotein E3 (HDAd-gE3, 5 x 1012 viral particles/kg, n=11, vector), empty vector (HDAd-0, 5 x 1012 VP/kg, n=11, vector control) or phosphate buffered saline (PBS, vehicle) and sacrificed 10 days after. Three aortas extending sinus to arch were dissected and pooled for extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | FL-Ovation kit (NuGen)
| | Sample_hyb_protocol | Affymetrix Workstation
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 standard protocol
| | Sample_data_processing | RMA using GeneSifter (VizX Labs LLC)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kazuhiro,,Oka
| | Sample_contact_email | kazuhiro@bcm.edu
| | Sample_contact_phone | 713-798-7381
| | Sample_contact_fax | 713-798-8764
| | Sample_contact_laboratory | Oka
| | Sample_contact_department | Molecular & Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030-3498
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM399nnn/GSM399508/suppl/GSM399508.CEL.gz
| | Sample_series_id | GSE15914
| | Sample_data_row_count | 45101
| | |
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