Search results for the GEO ID: GSE15955  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM400149 | GPL1261 |
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Colon epithelium, Stat3flfl VilCre-, biolrep1
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colon epithelium, DSS colitis (2.5%), d5
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tissue: Colon epithelium
genotype: Stat3floxflox VillinCre-
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Gene expression data from acute DSS colitis
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| Sample_geo_accession | GSM400149
| | Sample_status | Public on May 08 2009
| | Sample_submission_date | May 05 2009
| | Sample_last_update_date | May 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were kept under SPF condition, Colitis was induced by dextran sodium sulphate (2.5 %) in the drinking water for 5 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified by RNeasy Microkit as recommended by the manufacturer (Qiagen) including on column DNA digestion as recommended by the manufacturer (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array 430 2.0 in Affymetrix GeneChip Hybridization oven 640. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Arrayassist version 5.5.1 (Stratagene) using GC-RMA as normalization method, followed by log scale transformation, grouping (cre- vs cre+), baseline transformation and advanced significance analysis including unpaired t-test.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Clemens,,Neufert
| | Sample_contact_department | First Department of Medicine
| | Sample_contact_institute | Friedrich-Alexander-University Erlangen-Nürnberg
| | Sample_contact_address | Ulmenweg 18
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400149/suppl/GSM400149.CEL.gz
| | Sample_series_id | GSE15955
| | Sample_data_row_count | 45101
| | |
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GSM400150 | GPL1261 |
|
Colon epithelium, Stat3flfl VilCre+, biolrep1
|
colon epithelium, DSS colitis (2.5%), d5
|
tissue: Colon epithelium
genotype: Stat3floxflox VillinCre+
|
Gene expression data from acute DSS colitis
|
| Sample_geo_accession | GSM400150
| | Sample_status | Public on May 08 2009
| | Sample_submission_date | May 05 2009
| | Sample_last_update_date | May 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were kept under SPF condition, Colitis was induced by dextran sodium sulphate (2.5 %) in the drinking water for 5 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified by RNeasy Microkit as recommended by the manufacturer (Qiagen) including on column DNA digestion as recommended by the manufacturer (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array 430 2.0 in Affymetrix GeneChip Hybridization oven 640. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Arrayassist version 5.5.1 (Stratagene) using GC-RMA as normalization method, followed by log scale transformation, grouping (cre- vs cre+), baseline transformation and advanced significance analysis including unpaired t-test.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Clemens,,Neufert
| | Sample_contact_department | First Department of Medicine
| | Sample_contact_institute | Friedrich-Alexander-University Erlangen-Nürnberg
| | Sample_contact_address | Ulmenweg 18
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400150/suppl/GSM400150.CEL.gz
| | Sample_series_id | GSE15955
| | Sample_data_row_count | 45101
| | |
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GSM400151 | GPL1261 |
|
Colon epithelium, Stat3flfl VilCre-, biolrep2
|
colon epithelium, DSS colitis (2.5%), d5
|
tissue: Colon epithelium
genotype: Stat3floxflox VillinCre-
|
Gene expression data from acute DSS colitis
|
| Sample_geo_accession | GSM400151
| | Sample_status | Public on May 08 2009
| | Sample_submission_date | May 05 2009
| | Sample_last_update_date | May 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were kept under SPF condition, Colitis was induced by dextran sodium sulphate (2.5 %) in the drinking water for 5 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified by RNeasy Microkit as recommended by the manufacturer (Qiagen) including on column DNA digestion as recommended by the manufacturer (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array 430 2.0 in Affymetrix GeneChip Hybridization oven 640. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Arrayassist version 5.5.1 (Stratagene) using GC-RMA as normalization method, followed by log scale transformation, grouping (cre- vs cre+), baseline transformation and advanced significance analysis including unpaired t-test.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Clemens,,Neufert
| | Sample_contact_department | First Department of Medicine
| | Sample_contact_institute | Friedrich-Alexander-University Erlangen-Nürnberg
| | Sample_contact_address | Ulmenweg 18
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400151/suppl/GSM400151.CEL.gz
| | Sample_series_id | GSE15955
| | Sample_data_row_count | 45101
| | |
|
GSM400152 | GPL1261 |
|
Colon epithelium, Stat3flfl VilCre+, biolrep2
|
colon epithelium, DSS colitis (2.5%), d5
|
tissue: Colon epithelium
genotype: Stat3floxflox VillinCre+
|
Gene expression data from acute DSS colitis
|
| Sample_geo_accession | GSM400152
| | Sample_status | Public on May 08 2009
| | Sample_submission_date | May 05 2009
| | Sample_last_update_date | May 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were kept under SPF condition, Colitis was induced by dextran sodium sulphate (2.5 %) in the drinking water for 5 days
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified by RNeasy Microkit as recommended by the manufacturer (Qiagen) including on column DNA digestion as recommended by the manufacturer (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array 430 2.0 in Affymetrix GeneChip Hybridization oven 640. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Arrayassist version 5.5.1 (Stratagene) using GC-RMA as normalization method, followed by log scale transformation, grouping (cre- vs cre+), baseline transformation and advanced significance analysis including unpaired t-test.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Clemens,,Neufert
| | Sample_contact_department | First Department of Medicine
| | Sample_contact_institute | Friedrich-Alexander-University Erlangen-Nürnberg
| | Sample_contact_address | Ulmenweg 18
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400152/suppl/GSM400152.CEL.gz
| | Sample_series_id | GSE15955
| | Sample_data_row_count | 45101
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