Search results for the GEO ID: GSE15960 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM400174 | GPL570 |
|
vad1
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: adenoma
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400174
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400174/suppl/GSM400174.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400175 | GPL570 |
|
vad2
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: adenoma
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400175
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400175/suppl/GSM400175.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400176 | GPL570 |
|
vad3
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: adenoma
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400176
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400176/suppl/GSM400176.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400177 | GPL570 |
|
vad4
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: adenoma
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400177
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400177/suppl/GSM400177.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400178 | GPL570 |
|
vad5
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: adenoma
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400178
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400178/suppl/GSM400178.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400179 | GPL570 |
|
vad6
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: adenoma
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400179
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400179/suppl/GSM400179.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400180 | GPL570 |
|
vCRC1
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: colorectal cancer
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400180
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400180/suppl/GSM400180.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400181 | GPL570 |
|
vCRC2
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: colorectal cancer
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400181
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400181/suppl/GSM400181.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400182 | GPL570 |
|
vCRC3
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: colorectal cancer
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400182
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400182/suppl/GSM400182.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400183 | GPL570 |
|
vCRC4
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: colorectal cancer
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400183
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400183/suppl/GSM400183.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400184 | GPL570 |
|
vCRC5
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: colorectal cancer
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400184
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400184/suppl/GSM400184.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400185 | GPL570 |
|
vCRC6
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: colorectal cancer
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400185
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400185/suppl/GSM400185.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400186 | GPL570 |
|
vn1
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: normal
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400186
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400186/suppl/GSM400186.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400187 | GPL570 |
|
vn2
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: normal
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400187
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400187/suppl/GSM400187.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400188 | GPL570 |
|
vn3
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: normal
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400188
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400188/suppl/GSM400188.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400189 | GPL570 |
|
vn4
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: normal
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400189
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400189/suppl/GSM400189.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400190 | GPL570 |
|
vn5
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: normal
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400190
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400190/suppl/GSM400190.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
GSM400191 | GPL570 |
|
vn6
|
laser microdissected human colonic epithelial cell sample
|
isolation method: laser microdissected
cell type: colonic epithelial cells
disease state: normal
|
Gene expression data from laser microdissected colonic epithelial cells
|
Sample_geo_accession | GSM400191
| Sample_status | Public on Mar 03 2010
| Sample_submission_date | May 05 2009
| Sample_last_update_date | Mar 03 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Micro extraction of total RNA was performed according to the manufacturer instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the two-round Affymetrix protocol from total RNA
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU133 Plus 2.0 chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the GeneChip 3000 Scanner
| Sample_data_processing | The data were preprocessed by the function mas5 from the Bioconductor affy package
| Sample_platform_id | GPL570
| Sample_contact_name | Wichmann,,Barna
| Sample_contact_email | wwbarna@yahoo.com
| Sample_contact_institute | SOTE
| Sample_contact_address | Szentkirály
| Sample_contact_city | Budapest
| Sample_contact_zip/postal_code | 1081
| Sample_contact_country | Hungary
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM400nnn/GSM400191/suppl/GSM400191.CEL.gz
| Sample_series_id | GSE15960
| Sample_data_row_count | 54675
| |
|
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