Search results for the GEO ID: GSE16067  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM402411 | GPL1261 |
|
Murine Lung Endothelial Cells Cnt1
|
mRNA from murine lung endothelial cells
|
cell type: lung endothelial cells
genotype: wild type control
|
Experimental Conditions: Hypoxia
Gene expression data from murine endothelial cells
Endothelial cells were isolated from lungs of VE-Cadherin-Cre HIF-2a floxed/WT mice for control cells and VE-Cadherin-Cre HIF-2a floxed/floxed mice for KO cells.
Endothelial cells were selected several times with specific endothelial cell markers and characterized by flow cytometry.
|
| Sample_geo_accession | GSM402411
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | May 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions, with additional purification with Qiagen Rneasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation version 2 was used for amplification, labeling and fragmentation
| | Sample_hyb_protocol | 3.5 ug of cDNA was hybridized on the Affymetrix Mouse Genome 430 2.0 Chip following standard protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip scanner 3000 7G
| | Sample_data_processing | The data were extracted with Microarray Suite version 5.0 (MAS 5.0) and normalized with the GC-RMA algorithm in Array Assist Lite 3.4
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Skuli
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 421 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402411/suppl/GSM402411.CEL.gz
| | Sample_series_id | GSE16067
| | Sample_data_row_count | 45101
| | |
|
GSM402412 | GPL1261 |
|
Murine Lung Endothelial Cells Cnt2
|
mRNA from murine lung endothelial cells
|
cell type: lung endothelial cells
genotype: wild type control
|
Experimental Conditions: Hypoxia
Gene expression data from murine endothelial cells
Endothelial cells were isolated from lungs of VE-Cadherin-Cre HIF-2a floxed/WT mice for control cells and VE-Cadherin-Cre HIF-2a floxed/floxed mice for KO cells.
Endothelial cells were selected several times with specific endothelial cell markers and characterized by flow cytometry.
|
| Sample_geo_accession | GSM402412
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | May 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions, with additional purification with Qiagen Rneasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation version 2 was used for amplification, labeling and fragmentation
| | Sample_hyb_protocol | 3.5 ug of cDNA was hybridized on the Affymetrix Mouse Genome 430 2.0 Chip following standard protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip scanner 3000 7G
| | Sample_data_processing | The data were extracted with Microarray Suite version 5.0 (MAS 5.0) and normalized with the GC-RMA algorithm in Array Assist Lite 3.4
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Skuli
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 421 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402412/suppl/GSM402412.CEL.gz
| | Sample_series_id | GSE16067
| | Sample_data_row_count | 45101
| | |
|
GSM402413 | GPL1261 |
|
Murine Lung Endothelial Cells Cnt3
|
mRNA from murine lung endothelial cells
|
cell type: lung endothelial cells
genotype: wild type control
|
Experimental Conditions: Hypoxia
Gene expression data from murine endothelial cells
Endothelial cells were isolated from lungs of VE-Cadherin-Cre HIF-2a floxed/WT mice for control cells and VE-Cadherin-Cre HIF-2a floxed/floxed mice for KO cells.
Endothelial cells were selected several times with specific endothelial cell markers and characterized by flow cytometry.
|
| Sample_geo_accession | GSM402413
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | May 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions, with additional purification with Qiagen Rneasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation version 2 was used for amplification, labeling and fragmentation
| | Sample_hyb_protocol | 3.5 ug of cDNA was hybridized on the Affymetrix Mouse Genome 430 2.0 Chip following standard protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip scanner 3000 7G
| | Sample_data_processing | The data were extracted with Microarray Suite version 5.0 (MAS 5.0) and normalized with the GC-RMA algorithm in Array Assist Lite 3.4
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Skuli
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 421 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402413/suppl/GSM402413.CEL.gz
| | Sample_series_id | GSE16067
| | Sample_data_row_count | 45101
| | |
|
GSM402414 | GPL1261 |
|
Murine Lung Endothelial Cells KO1
|
mRNA from murine lung endothelial cells
|
cell type: lung endothelial cells
genotype: Hif-2a knockout
|
Experimental Conditions: Hypoxia
Gene expression data from murine endothelial cells
Endothelial cells were isolated from lungs of VE-Cadherin-Cre HIF-2a floxed/WT mice for control cells and VE-Cadherin-Cre HIF-2a floxed/floxed mice for KO cells.
Endothelial cells were selected several times with specific endothelial cell markers and characterized by flow cytometry.
|
| Sample_geo_accession | GSM402414
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | May 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions, with additional purification with Qiagen Rneasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation version 2 was used for amplification, labeling and fragmentation
| | Sample_hyb_protocol | 3.5 ug of cDNA was hybridized on the Affymetrix Mouse Genome 430 2.0 Chip following standard protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip scanner 3000 7G
| | Sample_data_processing | The data were extracted with Microarray Suite version 5.0 (MAS 5.0) and normalized with the GC-RMA algorithm in Array Assist Lite 3.4
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Skuli
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 421 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402414/suppl/GSM402414.CEL.gz
| | Sample_series_id | GSE16067
| | Sample_data_row_count | 45101
| | |
|
GSM402415 | GPL1261 |
|
Murine Lung Endothelial Cells KO2
|
mRNA from murine lung endothelial cells
|
cell type: lung endothelial cells
genotype: Hif-2a knockout
|
Experimental Conditions: Hypoxia
Gene expression data from murine endothelial cells
Endothelial cells were isolated from lungs of VE-Cadherin-Cre HIF-2a floxed/WT mice for control cells and VE-Cadherin-Cre HIF-2a floxed/floxed mice for KO cells.
Endothelial cells were selected several times with specific endothelial cell markers and characterized by flow cytometry.
|
| Sample_geo_accession | GSM402415
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | May 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions, with additional purification with Qiagen Rneasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation version 2 was used for amplification, labeling and fragmentation
| | Sample_hyb_protocol | 3.5 ug of cDNA was hybridized on the Affymetrix Mouse Genome 430 2.0 Chip following standard protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip scanner 3000 7G
| | Sample_data_processing | The data were extracted with Microarray Suite version 5.0 (MAS 5.0) and normalized with the GC-RMA algorithm in Array Assist Lite 3.4
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Skuli
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 421 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402415/suppl/GSM402415.CEL.gz
| | Sample_series_id | GSE16067
| | Sample_data_row_count | 45101
| | |
|
GSM402416 | GPL1261 |
|
Murine Lung Endothelial Cells KO3
|
mRNA from murine lung endothelial cells
|
cell type: lung endothelial cells
genotype: Hif-2a knockout
|
Experimental Conditions: Hypoxia
Gene expression data from murine endothelial cells
Endothelial cells were isolated from lungs of VE-Cadherin-Cre HIF-2a floxed/WT mice for control cells and VE-Cadherin-Cre HIF-2a floxed/floxed mice for KO cells.
Endothelial cells were selected several times with specific endothelial cell markers and characterized by flow cytometry.
|
| Sample_geo_accession | GSM402416
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | May 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions, with additional purification with Qiagen Rneasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation version 2 was used for amplification, labeling and fragmentation
| | Sample_hyb_protocol | 3.5 ug of cDNA was hybridized on the Affymetrix Mouse Genome 430 2.0 Chip following standard protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip scanner 3000 7G
| | Sample_data_processing | The data were extracted with Microarray Suite version 5.0 (MAS 5.0) and normalized with the GC-RMA algorithm in Array Assist Lite 3.4
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Skuli
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 421 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402416/suppl/GSM402416.CEL.gz
| | Sample_series_id | GSE16067
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
