Search results for the GEO ID: GSE16093 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM402707 | GPL570 |
|
Human newborn fibroblast
|
Human newborn fibroblast
|
cell type: fibroblast
|
Total RNAs were prepared from human fibroblasts using TRIzol reagent (Invitrogen, Carlsbad, CA) and hybridized to Affymetrix Human Expression Array U133 Plus 2.0 analyzing over 47,000 human transcripts at the Harvard Partners Center for Genomics and Genetics. Detailed procedure is described in the website at http://www.hpcgg.org/Microarrays/overview.jsp.
|
Sample_geo_accession | GSM402707
| Sample_status | Public on May 29 2009
| Sample_submission_date | May 13 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent (Invitrogen, Carlsbad, CA)
| Sample_label_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_label_protocol_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_hyb_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_scan_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_data_processing | Affymetrix MAS5.0 algorithm was used for data processing
| Sample_platform_id | GPL570
| Sample_contact_name | Kwang-Soo,,Kim
| Sample_contact_email | kskim@mclean.harvard.edu
| Sample_contact_phone | 617-855-2024
| Sample_contact_fax | 617-855-3479
| Sample_contact_department | Molecular neurobiology lab
| Sample_contact_institute | McLean Hospital
| Sample_contact_address | 115 Mill st
| Sample_contact_city | Belmont
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02478
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402707/suppl/GSM402707.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402707/suppl/GSM402707.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16093
| Sample_data_row_count | 54675
| |
|
GSM402708 | GPL570 |
|
H9 Human Embryonic Stem Cell
|
H9 Human Embryonic Stem Cell
|
cell line: H9 embryonic stem cell line
|
Total RNAs were prepared from human fibroblasts, H9, and hiPS lines using TRIzol reagent (Invitrogen, Carlsbad, CA) and hybridized to Affymetrix Human Expression Array U133 Plus 2.0 analyzing over 47,000 human transcripts at the Harvard Partners Center for Genomics and Genetics. Detailed procedure is described in the website at http://www.hpcgg.org/Microarrays/overview.jsp.
|
Sample_geo_accession | GSM402708
| Sample_status | Public on May 29 2009
| Sample_submission_date | May 13 2009
| Sample_last_update_date | May 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent (Invitrogen, Carlsbad, CA)
| Sample_label_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_label_protocol_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_hyb_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_scan_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_data_processing | Affymetrix MAS5.0 algorithm was used for data processing
| Sample_platform_id | GPL570
| Sample_contact_name | Kwang-Soo,,Kim
| Sample_contact_email | kskim@mclean.harvard.edu
| Sample_contact_phone | 617-855-2024
| Sample_contact_fax | 617-855-3479
| Sample_contact_department | Molecular neurobiology lab
| Sample_contact_institute | McLean Hospital
| Sample_contact_address | 115 Mill st
| Sample_contact_city | Belmont
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02478
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402708/suppl/GSM402708.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402708/suppl/GSM402708.CHP.gz
| Sample_series_id | GSE16093
| Sample_data_row_count | 54675
| |
|
GSM402717 | GPL570 |
|
Human Induced Pluripotent Stem Cells by Direct Delivery of Reprogramming Proteins (Line 1)
|
human newborn fibroblasts
|
cell line: hiPS induced pluripotent embryonic stem cell line (Line 1)
protocol: direct delivery of reprogramming proteins
|
Total RNAs were prepared from human fibroblasts, H9, and hiPS lines using TRIzol reagent (Invitrogen, Carlsbad, CA) and hybridized to Affymetrix Human Expression Array U133 Plus 2.0 analyzing over 47,000 human transcripts at the Harvard Partners Center for Genomics and Genetics. Detailed procedure is described in the website at http://www.hpcgg.org/Microarrays/overview.jsp.
|
Sample_geo_accession | GSM402717
| Sample_status | Public on May 29 2009
| Sample_submission_date | May 13 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent (Invitrogen, Carlsbad, CA)
| Sample_label_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_label_protocol_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_hyb_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_scan_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_data_processing | Affymetrix MAS5.0 algorithm was used for data processing
| Sample_platform_id | GPL570
| Sample_contact_name | Kwang-Soo,,Kim
| Sample_contact_email | kskim@mclean.harvard.edu
| Sample_contact_phone | 617-855-2024
| Sample_contact_fax | 617-855-3479
| Sample_contact_department | Molecular neurobiology lab
| Sample_contact_institute | McLean Hospital
| Sample_contact_address | 115 Mill st
| Sample_contact_city | Belmont
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02478
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402717/suppl/GSM402717.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402717/suppl/GSM402717.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16093
| Sample_data_row_count | 54675
| |
|
GSM402752 | GPL570 |
|
Human Induced Pluripotent Stem Cells by Direct Delivery of Reprogramming Proteins (Line 2)
|
Human newborn fibroblasts
|
cell line: hiPS induced pluripotent embryonic stem cell line (Line 2)
protocol: direct delivery of reprogramming proteins
|
Total RNAs were prepared from human fibroblasts, H9, and hiPS lines using TRIzol reagent (Invitrogen, Carlsbad, CA) and hybridized to Affymetrix Human Expression Array U133 Plus 2.0 analyzing over 47,000 human transcripts at the Harvard Partners Center for Genomics and Genetics. Detailed procedure is described in the website at http://www.hpcgg.org/Microarrays/overview.jsp.
|
Sample_geo_accession | GSM402752
| Sample_status | Public on May 29 2009
| Sample_submission_date | May 13 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent (Invitrogen, Carlsbad, CA)
| Sample_label_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_label_protocol_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_hyb_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_scan_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_data_processing | Affymetrix MAS5.0 algorithm was used for data processing
| Sample_platform_id | GPL570
| Sample_contact_name | Kwang-Soo,,Kim
| Sample_contact_email | kskim@mclean.harvard.edu
| Sample_contact_phone | 617-855-2024
| Sample_contact_fax | 617-855-3479
| Sample_contact_department | Molecular neurobiology lab
| Sample_contact_institute | McLean Hospital
| Sample_contact_address | 115 Mill st
| Sample_contact_city | Belmont
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02478
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402752/suppl/GSM402752.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402752/suppl/GSM402752.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16093
| Sample_data_row_count | 54675
| |
|
GSM402806 | GPL570 |
|
Human Induced Pluripotent Stem Cells by retroviral transfection of Reprogramming genes
|
human newborn fibroblasts
|
cell line: hiPS induced pluripotent embryonic stem cell line
protocol: retroviral transfection of reprogramming genes
|
Total RNAs were prepared from human fibroblasts, H9, and hiPS lines using TRIzol reagent (Invitrogen, Carlsbad, CA) and hybridized to Affymetrix Human Expression Array U133 Plus 2.0 analyzing over 47,000 human transcripts at the Harvard Partners Center for Genomics and Genetics. Detailed procedure is described in the website at http://www.hpcgg.org/Microarrays/overview.jsp.
|
Sample_geo_accession | GSM402806
| Sample_status | Public on May 29 2009
| Sample_submission_date | May 13 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent (Invitrogen, Carlsbad, CA)
| Sample_label_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_label_protocol_ch1 | Samples are labeled according to the Affymetrix GeneChip Expression Labeling protocol by the Harvard Partners Center for Genomics and Genetics.
| Sample_hyb_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_scan_protocol | Affymetrix expression projects are hybridized and scanned according to Affymetrix protocols by the Harvard Partners Center for Genomics and Genetics.
| Sample_data_processing | Affymetrix MAS5.0 algorithm was used for data processing
| Sample_platform_id | GPL570
| Sample_contact_name | Kwang-Soo,,Kim
| Sample_contact_email | kskim@mclean.harvard.edu
| Sample_contact_phone | 617-855-2024
| Sample_contact_fax | 617-855-3479
| Sample_contact_department | Molecular neurobiology lab
| Sample_contact_institute | McLean Hospital
| Sample_contact_address | 115 Mill st
| Sample_contact_city | Belmont
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02478
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402806/suppl/GSM402806.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402806/suppl/GSM402806.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16093
| Sample_data_row_count | 54675
| |
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