Search results for the GEO ID: GSE16114  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM403220 | GPL1261 |
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wt_d26_rep1
|
ovary from 26-day-old wild type mice
|
tissue: ovary
genotype: wild type
age: 26 days
|
Gene expression data.
Replicate 1 of 2.
|
| Sample_geo_accession | GSM403220
| | Sample_status | Public on May 15 2009
| | Sample_submission_date | May 14 2009
| | Sample_last_update_date | Mar 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM403nnn/GSM403220/suppl/GSM403220.CEL.gz
| | Sample_relation | Reanalyzed by: GSM685061
| | Sample_series_id | GSE16114
| | Sample_data_row_count | 45101
| | |
|
GSM403221 | GPL1261 |
|
wt_d26_rep2
|
ovary from 26-day-old wild type mice
|
tissue: ovary
genotype: wild type
age: 26 days
|
Gene expression data.
Replicate 2 of 2.
|
| Sample_geo_accession | GSM403221
| | Sample_status | Public on May 15 2009
| | Sample_submission_date | May 14 2009
| | Sample_last_update_date | Mar 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM403nnn/GSM403221/suppl/GSM403221.CEL.gz
| | Sample_relation | Reanalyzed by: GSM685061
| | Sample_series_id | GSE16114
| | Sample_data_row_count | 45101
| | |
|
GSM403222 | GPL1261 |
|
Kras_d26_rep1
|
ovary from 26-day-old Kras mutant mice
|
tissue: ovary
genotype: Kras (G12D) f/+; AMHR2-CRE
age: 26 days
|
Gene expression data.
Replicate 1 of 2.
|
| Sample_geo_accession | GSM403222
| | Sample_status | Public on May 15 2009
| | Sample_submission_date | May 14 2009
| | Sample_last_update_date | May 14 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM403nnn/GSM403222/suppl/GSM403222.CEL.gz
| | Sample_series_id | GSE16114
| | Sample_data_row_count | 45101
| | |
|
GSM403223 | GPL1261 |
|
Kras_d26_rep2
|
ovary from 26-day-old Kras mutant mice
|
tissue: ovary
genotype: Kras (G12D) f/+; AMHR2-CRE
age: 26 days
|
Gene expression data.
Replicate 2 of 2.
|
| Sample_geo_accession | GSM403223
| | Sample_status | Public on May 15 2009
| | Sample_submission_date | May 14 2009
| | Sample_last_update_date | May 14 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM403nnn/GSM403223/suppl/GSM403223.CEL.gz
| | Sample_series_id | GSE16114
| | Sample_data_row_count | 45101
| | |
|
GSM403224 | GPL1261 |
|
Kras_3m_rep1
|
ovary from 3-month-old Kras mutant mice
|
tissue: ovary
genotype: Kras (G12D) f/+; AMHR2-CRE
age: 3 months
|
Gene expression data.
Replicate 1 of 2.
|
| Sample_geo_accession | GSM403224
| | Sample_status | Public on May 15 2009
| | Sample_submission_date | May 14 2009
| | Sample_last_update_date | May 14 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM403nnn/GSM403224/suppl/GSM403224.cel.gz
| | Sample_series_id | GSE16114
| | Sample_data_row_count | 45101
| | |
|
GSM403225 | GPL1261 |
|
Kras_3m_rep2
|
ovary from 3-month-old Kras mutant mice
|
tissue: ovary
genotype: Kras (G12D) f/+; AMHR2-CRE
age: 3 months
|
Gene expression data.
Replicate 2 of 2.
|
| Sample_geo_accession | GSM403225
| | Sample_status | Public on May 15 2009
| | Sample_submission_date | May 14 2009
| | Sample_last_update_date | May 14 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM403nnn/GSM403225/suppl/GSM403225.cel.gz
| | Sample_series_id | GSE16114
| | Sample_data_row_count | 45101
| | |
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