Search results for the GEO ID: GSE16193 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM406482 | GPL570 |
|
GAF071002_THP1_C1
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Air
|
GAF071002_THP1_C1
|
Sample_geo_accession | GSM406482
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406482/suppl/GSM406482.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406483 | GPL570 |
|
GAF071002_THP1_C2
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Air
|
GAF071002_THP1_C2
|
Sample_geo_accession | GSM406483
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406483/suppl/GSM406483.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406484 | GPL570 |
|
GAF071002_THP1_C3
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Air
|
GAF071002_THP1_C3
|
Sample_geo_accession | GSM406484
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406484/suppl/GSM406484.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406485 | GPL570 |
|
GAF071003_THP1_C4
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Air
|
GAF071003_THP1_C4
|
Sample_geo_accession | GSM406485
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406485/suppl/GSM406485.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406486 | GPL570 |
|
GAF071003_THP1_C5
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Air
|
GAF071003_THP1_C5
|
Sample_geo_accession | GSM406486
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406486/suppl/GSM406486.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406487 | GPL570 |
|
GAF071002_THP1_CO1
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Carbon Monoxide Gas (250 ppm)
|
GAF071002_THP1_CO1
|
Sample_geo_accession | GSM406487
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406487/suppl/GSM406487.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406488 | GPL570 |
|
GAF071002_THP1_CO2
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Carbon Monoxide Gas (250 ppm)
|
GAF071002_THP1_CO2
|
Sample_geo_accession | GSM406488
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406488/suppl/GSM406488.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406489 | GPL570 |
|
GAF071002_THP1_CO3
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Carbon Monoxide Gas (250 ppm)
|
GAF071002_THP1_CO3
|
Sample_geo_accession | GSM406489
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406489/suppl/GSM406489.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406490 | GPL570 |
|
GAF071003_THP1_CO4
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Carbon Monoxide Gas (250 ppm)
|
GAF071003_THP1_CO4
|
Sample_geo_accession | GSM406490
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406490/suppl/GSM406490.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406491 | GPL570 |
|
GAF071003_THP1_CO5
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: Carbon Monoxide Gas (250 ppm)
|
GAF071003_THP1_CO5
|
Sample_geo_accession | GSM406491
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406491/suppl/GSM406491.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406492 | GPL570 |
|
GAF071002_THP1_LPS+CO1
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Carbon Monoxide (250 ppm)
|
GAF071002_THP1_LPS+CO1
|
Sample_geo_accession | GSM406492
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406492/suppl/GSM406492.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406493 | GPL570 |
|
GAF071002_THP1_LPS+CO2
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Carbon Monoxide (250 ppm)
|
GAF071002_THP1_LPS+CO2
|
Sample_geo_accession | GSM406493
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406493/suppl/GSM406493.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406494 | GPL570 |
|
GAF071002_THP1_LPS+CO3
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Carbon Monoxide (250 ppm)
|
GAF071002_THP1_LPS+CO3
|
Sample_geo_accession | GSM406494
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406494/suppl/GSM406494.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406495 | GPL570 |
|
GAF071003_THP1_LPS+CO4
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Carbon Monoxide (250 ppm)
|
GAF071003_THP1_LPS+CO4
|
Sample_geo_accession | GSM406495
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406495/suppl/GSM406495.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406496 | GPL570 |
|
GAF071003_THP1_LPS+CO5
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Carbon Monoxide (250 ppm)
|
GAF071003_THP1_LPS+CO5
|
Sample_geo_accession | GSM406496
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406496/suppl/GSM406496.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406497 | GPL570 |
|
GAF071002_THP1_LPS1
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Air
|
GAF071002_THP1_LPS1
|
Sample_geo_accession | GSM406497
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406497/suppl/GSM406497.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406498 | GPL570 |
|
GAF071002_THP1_LPS2
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Air
|
GAF071002_THP1_LPS2
|
Sample_geo_accession | GSM406498
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406498/suppl/GSM406498.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406499 | GPL570 |
|
GAF071002_THP1_LPS3
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Air
|
GAF071002_THP1_LPS3
|
Sample_geo_accession | GSM406499
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406499/suppl/GSM406499.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406500 | GPL570 |
|
GAF071003_THP1_LPS4
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Air
|
GAF071003_THP1_LPS4
|
Sample_geo_accession | GSM406500
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406500/suppl/GSM406500.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
GSM406501 | GPL570 |
|
GAF071003_THP1_LPS5
|
THP-1 Cells
|
cell type: THP-1 Cells
treatment: LPS (1 ug/ml) and Air
|
GAF071003_THP1_LPS5
|
Sample_geo_accession | GSM406501
| Sample_status | Public on May 21 2010
| Sample_submission_date | May 21 2009
| Sample_last_update_date | May 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | PRINCIPLE: Cells are lysed and homogenized with guanidine isothiocyanate. RNA, in the presence of ETOH, binds to the silica based membrane.Contaminants are washed away and the RNA is eluted with DEPC water.
| Sample_extract_protocol_ch1 | Method: THP-1 cells (2 x 106) were washed with cold HBSS. RLT buffer containing beta-Mercaptoethanol and guanidine isothiocyanate was added and cells were shredded in Qiashredder (Qiagen). Equal volume of 70% EtOH was added and passed through RNeasy mini spin column. Samples were treated with Dnase-1. RNA was finally washed and eluted in RNase free water. 2 ug RNA was used for microarray.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix procedures
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Jennifer,,Barb
| Sample_contact_email | barbj@mail.nih.gov
| Sample_contact_phone | 3014359232
| Sample_contact_fax | 3014024544
| Sample_contact_laboratory | MSCL
| Sample_contact_department | DCB
| Sample_contact_institute | NIH
| Sample_contact_address | 12 South Drive Bldg 12A Room 2001
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM406nnn/GSM406501/suppl/GSM406501.CEL.gz
| Sample_series_id | GSE16193
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|