Search results for the GEO ID: GSE16381  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM410930 | GPL1261 |
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liver, txnrd1 cond/+ albCre0, 70
|
Mus musculus adult liver
|
tissue: liver
age: adult
genetic modification: txnrd1 cond/+ albCre0
|
Gene expression in liver, Txnrd1 wildtype and knockout
|
| Sample_geo_accession | GSM410930
| | Sample_status | Public on Jun 03 2009
| | Sample_submission_date | Jun 02 2009
| | Sample_last_update_date | Jun 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Young male mice, singly housed 10d, 14:10h light cycle, 2:30 pm harvest.
| | Sample_growth_protocol_ch1 | Experimental livers come from mice with a conditional-null allele of txnrd1 disrupted by albCre.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total liver RNA sedimented through CsCl cushions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One cycle biotinylated cRNA generated from 1 µg total RNA with Ambion Message Amp-II Biotin Enhanced system.
| | Sample_hyb_protocol | Following fragmentation, 15 µg of biotinylated cRNA was hybridized for 16 h at 45oC on Affymetrix Mouse 430 2.0 arrays. Washes and staining were done in Affymetrix Fludics Station 400.
| | Sample_scan_protocol | Affymetrix 7G scanner.
| | Sample_data_processing | The data were imported into Genespring using RMA preprocessing for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ed,,Schmidt
| | Sample_contact_email | eschmidt@montana.edu
| | Sample_contact_phone | 406 994-6375
| | Sample_contact_fax | 406 994-4303
| | Sample_contact_department | Veterinary Molecular Biology
| | Sample_contact_institute | Montana State University
| | Sample_contact_address | VMB Molecular Biosciences, 960 Technology Blvd
| | Sample_contact_city | Bozeman
| | Sample_contact_state | MT
| | Sample_contact_zip/postal_code | 59718
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410930/suppl/GSM410930.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410930/suppl/GSM410930.CHP.gz
| | Sample_series_id | GSE16381
| | Sample_data_row_count | 45101
| | |
|
GSM410931 | GPL1261 |
|
liver, txnrd1 cond/+ albCre0, 71
|
Mus musculus adult liver
|
tissue: liver
age: adult
genetic modification: txnrd1 cond/+ albCre0
|
Gene expression in liver, Txnrd1 wildtype and knockout
|
| Sample_geo_accession | GSM410931
| | Sample_status | Public on Jun 03 2009
| | Sample_submission_date | Jun 02 2009
| | Sample_last_update_date | Jun 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Young male mice, singly housed 10d, 14:10h light cycle, 2:30 pm harvest.
| | Sample_growth_protocol_ch1 | Experimental livers come from mice with a conditional-null allele of txnrd1 disrupted by albCre.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total liver RNA sedimented through CsCl cushions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One cycle biotinylated cRNA generated from 1 µg total RNA with Ambion Message Amp-II Biotin Enhanced system.
| | Sample_hyb_protocol | Following fragmentation, 15 µg of biotinylated cRNA was hybridized for 16 h at 45oC on Affymetrix Mouse 430 2.0 arrays. Washes and staining were done in Affymetrix Fludics Station 400.
| | Sample_scan_protocol | Affymetrix 7G scanner.
| | Sample_data_processing | The data were imported into Genespring using RMA preprocessing for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ed,,Schmidt
| | Sample_contact_email | eschmidt@montana.edu
| | Sample_contact_phone | 406 994-6375
| | Sample_contact_fax | 406 994-4303
| | Sample_contact_department | Veterinary Molecular Biology
| | Sample_contact_institute | Montana State University
| | Sample_contact_address | VMB Molecular Biosciences, 960 Technology Blvd
| | Sample_contact_city | Bozeman
| | Sample_contact_state | MT
| | Sample_contact_zip/postal_code | 59718
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410931/suppl/GSM410931.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410931/suppl/GSM410931.CHP.gz
| | Sample_series_id | GSE16381
| | Sample_data_row_count | 45101
| | |
|
GSM410932 | GPL1261 |
|
liver, txnrd1 cond/+ albCre0, 80
|
Mus musculus adult liver
|
tissue: liver
age: adult
genetic modification: txnrd1 cond/+ albCre0
|
Gene expression in liver, Txnrd1 wildtype and knockout
|
| Sample_geo_accession | GSM410932
| | Sample_status | Public on Jun 03 2009
| | Sample_submission_date | Jun 02 2009
| | Sample_last_update_date | Jun 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Young male mice, singly housed 10d, 14:10h light cycle, 2:30 pm harvest.
| | Sample_growth_protocol_ch1 | Experimental livers come from mice with a conditional-null allele of txnrd1 disrupted by albCre.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total liver RNA sedimented through CsCl cushions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One cycle biotinylated cRNA generated from 1 µg total RNA with Ambion Message Amp-II Biotin Enhanced system.
| | Sample_hyb_protocol | Following fragmentation, 15 µg of biotinylated cRNA was hybridized for 16 h at 45oC on Affymetrix Mouse 430 2.0 arrays. Washes and staining were done in Affymetrix Fludics Station 400.
| | Sample_scan_protocol | Affymetrix 7G scanner.
| | Sample_data_processing | The data were imported into Genespring using RMA preprocessing for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ed,,Schmidt
| | Sample_contact_email | eschmidt@montana.edu
| | Sample_contact_phone | 406 994-6375
| | Sample_contact_fax | 406 994-4303
| | Sample_contact_department | Veterinary Molecular Biology
| | Sample_contact_institute | Montana State University
| | Sample_contact_address | VMB Molecular Biosciences, 960 Technology Blvd
| | Sample_contact_city | Bozeman
| | Sample_contact_state | MT
| | Sample_contact_zip/postal_code | 59718
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410932/suppl/GSM410932.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410932/suppl/GSM410932.CHP.gz
| | Sample_series_id | GSE16381
| | Sample_data_row_count | 45101
| | |
|
GSM410933 | GPL1261 |
|
liver, txnrd1 cond/+ albCre0, 82
|
Mus musculus adult liver
|
tissue: liver
age: adult
genetic modification: txnrd1 cond/+ albCre0
|
Gene expression in liver, Txnrd1 wildtype and knockout
|
| Sample_geo_accession | GSM410933
| | Sample_status | Public on Jun 03 2009
| | Sample_submission_date | Jun 02 2009
| | Sample_last_update_date | Jun 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Young male mice, singly housed 10d, 14:10h light cycle, 2:30 pm harvest.
| | Sample_growth_protocol_ch1 | Experimental livers come from mice with a conditional-null allele of txnrd1 disrupted by albCre.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total liver RNA sedimented through CsCl cushions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One cycle biotinylated cRNA generated from 1 µg total RNA with Ambion Message Amp-II Biotin Enhanced system.
| | Sample_hyb_protocol | Following fragmentation, 15 µg of biotinylated cRNA was hybridized for 16 h at 45oC on Affymetrix Mouse 430 2.0 arrays. Washes and staining were done in Affymetrix Fludics Station 400.
| | Sample_scan_protocol | Affymetrix 7G scanner.
| | Sample_data_processing | The data were imported into Genespring using RMA preprocessing for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ed,,Schmidt
| | Sample_contact_email | eschmidt@montana.edu
| | Sample_contact_phone | 406 994-6375
| | Sample_contact_fax | 406 994-4303
| | Sample_contact_department | Veterinary Molecular Biology
| | Sample_contact_institute | Montana State University
| | Sample_contact_address | VMB Molecular Biosciences, 960 Technology Blvd
| | Sample_contact_city | Bozeman
| | Sample_contact_state | MT
| | Sample_contact_zip/postal_code | 59718
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410933/suppl/GSM410933.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410933/suppl/GSM410933.CHP.gz
| | Sample_series_id | GSE16381
| | Sample_data_row_count | 45101
| | |
|
GSM410934 | GPL1261 |
|
liver, txnrd1 cond/- albCre1, 69
|
Mus musculus adult liver
|
tissue: liver
age: adult
genetic modification: txnrd1 cond/- albCre1
|
Gene expression in liver, Txnrd1 wildtype and knockout
|
| Sample_geo_accession | GSM410934
| | Sample_status | Public on Jun 03 2009
| | Sample_submission_date | Jun 02 2009
| | Sample_last_update_date | Jun 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Young male mice, singly housed 10d, 14:10h light cycle, 2:30 pm harvest.
| | Sample_growth_protocol_ch1 | Experimental livers come from mice with a conditional-null allele of txnrd1 disrupted by albCre.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total liver RNA sedimented through CsCl cushions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One cycle biotinylated cRNA generated from 1 µg total RNA with Ambion Message Amp-II Biotin Enhanced system.
| | Sample_hyb_protocol | Following fragmentation, 15 µg of biotinylated cRNA was hybridized for 16 h at 45oC on Affymetrix Mouse 430 2.0 arrays. Washes and staining were done in Affymetrix Fludics Station 400.
| | Sample_scan_protocol | Affymetrix 7G scanner.
| | Sample_data_processing | The data were imported into Genespring using RMA preprocessing for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ed,,Schmidt
| | Sample_contact_email | eschmidt@montana.edu
| | Sample_contact_phone | 406 994-6375
| | Sample_contact_fax | 406 994-4303
| | Sample_contact_department | Veterinary Molecular Biology
| | Sample_contact_institute | Montana State University
| | Sample_contact_address | VMB Molecular Biosciences, 960 Technology Blvd
| | Sample_contact_city | Bozeman
| | Sample_contact_state | MT
| | Sample_contact_zip/postal_code | 59718
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410934/suppl/GSM410934.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410934/suppl/GSM410934.CHP.gz
| | Sample_series_id | GSE16381
| | Sample_data_row_count | 45101
| | |
|
GSM410935 | GPL1261 |
|
liver, txnrd1 cond/- albCre1, 72
|
Mus musculus adult liver
|
tissue: liver
age: adult
genetic modification: txnrd1 cond/- albCre1
|
Gene expression in liver, Txnrd1 wildtype and knockout
|
| Sample_geo_accession | GSM410935
| | Sample_status | Public on Jun 03 2009
| | Sample_submission_date | Jun 02 2009
| | Sample_last_update_date | Jun 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Young male mice, singly housed 10d, 14:10h light cycle, 2:30 pm harvest.
| | Sample_growth_protocol_ch1 | Experimental livers come from mice with a conditional-null allele of txnrd1 disrupted by albCre.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total liver RNA sedimented through CsCl cushions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One cycle biotinylated cRNA generated from 1 µg total RNA with Ambion Message Amp-II Biotin Enhanced system.
| | Sample_hyb_protocol | Following fragmentation, 15 µg of biotinylated cRNA was hybridized for 16 h at 45oC on Affymetrix Mouse 430 2.0 arrays. Washes and staining were done in Affymetrix Fludics Station 400.
| | Sample_scan_protocol | Affymetrix 7G scanner.
| | Sample_data_processing | The data were imported into Genespring using RMA preprocessing for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ed,,Schmidt
| | Sample_contact_email | eschmidt@montana.edu
| | Sample_contact_phone | 406 994-6375
| | Sample_contact_fax | 406 994-4303
| | Sample_contact_department | Veterinary Molecular Biology
| | Sample_contact_institute | Montana State University
| | Sample_contact_address | VMB Molecular Biosciences, 960 Technology Blvd
| | Sample_contact_city | Bozeman
| | Sample_contact_state | MT
| | Sample_contact_zip/postal_code | 59718
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410935/suppl/GSM410935.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410935/suppl/GSM410935.CHP.gz
| | Sample_series_id | GSE16381
| | Sample_data_row_count | 45101
| | |
|
GSM410936 | GPL1261 |
|
liver, txnrd1 cond/- albCre1, 73
|
Mus musculus adult liver
|
tissue: liver
age: adult
genetic modification: txnrd1 cond/- albCre1
|
Gene expression in liver, Txnrd1 wildtype and knockout
|
| Sample_geo_accession | GSM410936
| | Sample_status | Public on Jun 03 2009
| | Sample_submission_date | Jun 02 2009
| | Sample_last_update_date | Jun 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Young male mice, singly housed 10d, 14:10h light cycle, 2:30 pm harvest.
| | Sample_growth_protocol_ch1 | Experimental livers come from mice with a conditional-null allele of txnrd1 disrupted by albCre.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total liver RNA sedimented through CsCl cushions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One cycle biotinylated cRNA generated from 1 µg total RNA with Ambion Message Amp-II Biotin Enhanced system.
| | Sample_hyb_protocol | Following fragmentation, 15 µg of biotinylated cRNA was hybridized for 16 h at 45oC on Affymetrix Mouse 430 2.0 arrays. Washes and staining were done in Affymetrix Fludics Station 400.
| | Sample_scan_protocol | Affymetrix 7G scanner.
| | Sample_data_processing | The data were imported into Genespring using RMA preprocessing for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ed,,Schmidt
| | Sample_contact_email | eschmidt@montana.edu
| | Sample_contact_phone | 406 994-6375
| | Sample_contact_fax | 406 994-4303
| | Sample_contact_department | Veterinary Molecular Biology
| | Sample_contact_institute | Montana State University
| | Sample_contact_address | VMB Molecular Biosciences, 960 Technology Blvd
| | Sample_contact_city | Bozeman
| | Sample_contact_state | MT
| | Sample_contact_zip/postal_code | 59718
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410936/suppl/GSM410936.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410936/suppl/GSM410936.CHP.gz
| | Sample_series_id | GSE16381
| | Sample_data_row_count | 45101
| | |
|
GSM410937 | GPL1261 |
|
liver, txnrd1 cond/- albCre1, 81
|
Mus musculus adult liver
|
tissue: liver
age: adult
genetic modification: txnrd1 cond/- albCre1
|
Gene expression in liver, Txnrd1 wildtype and knockout
|
| Sample_geo_accession | GSM410937
| | Sample_status | Public on Jun 03 2009
| | Sample_submission_date | Jun 02 2009
| | Sample_last_update_date | Jun 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Young male mice, singly housed 10d, 14:10h light cycle, 2:30 pm harvest.
| | Sample_growth_protocol_ch1 | Experimental livers come from mice with a conditional-null allele of txnrd1 disrupted by albCre.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total liver RNA sedimented through CsCl cushions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One cycle biotinylated cRNA generated from 1 µg total RNA with Ambion Message Amp-II Biotin Enhanced system.
| | Sample_hyb_protocol | Following fragmentation, 15 µg of biotinylated cRNA was hybridized for 16 h at 45oC on Affymetrix Mouse 430 2.0 arrays. Washes and staining were done in Affymetrix Fludics Station 400.
| | Sample_scan_protocol | Affymetrix 7G scanner.
| | Sample_data_processing | The data were imported into Genespring using RMA preprocessing for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ed,,Schmidt
| | Sample_contact_email | eschmidt@montana.edu
| | Sample_contact_phone | 406 994-6375
| | Sample_contact_fax | 406 994-4303
| | Sample_contact_department | Veterinary Molecular Biology
| | Sample_contact_institute | Montana State University
| | Sample_contact_address | VMB Molecular Biosciences, 960 Technology Blvd
| | Sample_contact_city | Bozeman
| | Sample_contact_state | MT
| | Sample_contact_zip/postal_code | 59718
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410937/suppl/GSM410937.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM410nnn/GSM410937/suppl/GSM410937.CHP.gz
| | Sample_series_id | GSE16381
| | Sample_data_row_count | 45101
| | |
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