Search results for the GEO ID: GSE16554  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM415902 | GPL96 |
|
Parental MDA-MB-231
|
MDA-MB-231
|
cell type: breast cancer
cell line: MDA-MB-231
|
MDA-MB-231
|
| Sample_geo_accession | GSM415902
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415902/suppl/GSM415902.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415902/suppl/GSM415902.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415903 | GPL96 |
|
modalploid subline of 1833
|
modalploid subline of 1833
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 1833
|
modalploid subline of 1833
|
| Sample_geo_accession | GSM415903
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415903/suppl/GSM415903.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415903/suppl/GSM415903.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415904 | GPL96 |
|
hyperploid subline of 1833
|
hyperploid subline of 1833
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 1833
|
hyperploid subline of 1833
|
| Sample_geo_accession | GSM415904
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415904/suppl/GSM415904.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415904/suppl/GSM415904.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415905 | GPL96 |
|
modalploid subline of 4175
|
modalploid subline of 4175
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 4175
|
modalploid subline of 4175
|
| Sample_geo_accession | GSM415905
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415905/suppl/GSM415905.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415905/suppl/GSM415905.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415906 | GPL96 |
|
hyperploid subline of 4175
|
hyperploid subline of 4175
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 4175
|
hyperploid subline of 4175
|
| Sample_geo_accession | GSM415906
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415906/suppl/GSM415906.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415906/suppl/GSM415906.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415907 | GPL96 |
|
Weakly Bone metastatic line 2293
|
Weakly Bone metastatic line 2293
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 2293
|
Weakly Bone metastatic line 2293
|
| Sample_geo_accession | GSM415907
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415907/suppl/GSM415907.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415907/suppl/GSM415907.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415908 | GPL96 |
|
Weakly Bone metastatic line 2295
|
Weakly Bone metastatic line 2295
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 2295
|
Weakly Bone metastatic line 2295
|
| Sample_geo_accession | GSM415908
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415908/suppl/GSM415908.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415908/suppl/GSM415908.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415909 | GPL96 |
|
Weakly Bone metastatic line 2296
|
Weakly Bone metastatic line 2296
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 2297
|
Weakly Bone metastatic line 2296
|
| Sample_geo_accession | GSM415909
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415909/suppl/GSM415909.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415909/suppl/GSM415909.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415910 | GPL96 |
|
Strongly Bone metastatic line 1833
|
Strongly Bone metastatic line 1833
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 1833
|
Strongly Bone metastatic line 1833
|
| Sample_geo_accession | GSM415910
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415910/suppl/GSM415910.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415910/suppl/GSM415910.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415911 | GPL96 |
|
Strongly Bone metastatic line 2274
|
Strongly Bone metastatic line 2274
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 2274
|
Strongly Bone metastatic line 2274
|
| Sample_geo_accession | GSM415911
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415911/suppl/GSM415911.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415911/suppl/GSM415911.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415912 | GPL96 |
|
Strongly Bone metastatic line 2268
|
Strongly Bone metastatic line 2268
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 2268
|
Strongly Bone metastatic line 2268
|
| Sample_geo_accession | GSM415912
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415912/suppl/GSM415912.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415912/suppl/GSM415912.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415913 | GPL96 |
|
Strongly Bone metastatic line 2269
|
Strongly Bone metastatic line 2269
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 2269
|
Strongly Bone metastatic line 2269
|
| Sample_geo_accession | GSM415913
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415913/suppl/GSM415913.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415913/suppl/GSM415913.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415914 | GPL96 |
|
Weakly Lung metastatic line SCP21
|
Weakly Lung metastatic line SCP21
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: SCP21
|
Weakly Lung metastatic line SCP21
|
| Sample_geo_accession | GSM415914
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415914/suppl/GSM415914.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415914/suppl/GSM415914.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415915 | GPL96 |
|
Weakly Lung metastatic line SCP6
|
Weakly Lung metastatic line SCP6
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: SCP6
|
Weakly Lung metastatic line SCP6
|
| Sample_geo_accession | GSM415915
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415915/suppl/GSM415915.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415915/suppl/GSM415915.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415916 | GPL96 |
|
Weakly Lung metastatic line SCP26
|
Weakly Lung metastatic line SCP26
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: SCP26
|
Weakly Lung metastatic line SCP26
|
| Sample_geo_accession | GSM415916
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415916/suppl/GSM415916.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415916/suppl/GSM415916.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415917 | GPL96 |
|
Strongly lung metastatic line 4142
|
Strongly lung metastatic line 4142
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 4142
|
Strongly lung metastatic line 4142
|
| Sample_geo_accession | GSM415917
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415917/suppl/GSM415917.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415917/suppl/GSM415917.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415918 | GPL96 |
|
Strongly lung metastatic line 4173
|
Strongly lung metastatic line 4173
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 4173
|
Strongly lung metastatic line 4173
|
| Sample_geo_accession | GSM415918
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415918/suppl/GSM415918.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415918/suppl/GSM415918.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415919 | GPL96 |
|
Strongly lung metastatic line 4175
|
Strongly lung metastatic line 4175
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 4175
|
Strongly lung metastatic line 4175
|
| Sample_geo_accession | GSM415919
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415919/suppl/GSM415919.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415919/suppl/GSM415919.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
GSM415920 | GPL96 |
|
Strongly lung metastatic line 4180
|
Strongly lung metastatic line 4180
|
cell type: breast cancer
parental cell line: MDA-MB-231
cell line: 4180
|
Strongly lung metastatic line 4180
|
| Sample_geo_accession | GSM415920
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jun 11 2009
| | Sample_last_update_date | Jun 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | These sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalized to 50th percentile) and Per Gene (normalized to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415920/suppl/GSM415920.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM415nnn/GSM415920/suppl/GSM415920.CHP.gz
| | Sample_series_id | GSE16554
| | Sample_data_row_count | 22283
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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