Search results for the GEO ID: GSE16595 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM417046 | GPL1261 |
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RP58+/+
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muscle in diaphragm
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strain: C57/BL6
tissue: skeletal muscle
developmental stage: E18.5
genotype: RP58+/+
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Gene expression data from WT mouse.
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Sample_geo_accession | GSM417046
| Sample_status | Public on Jul 31 2009
| Sample_submission_date | Jun 12 2009
| Sample_last_update_date | Jun 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA of the culture was extracted using ISOGEN (NIPPONGENE).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA following standard Affymetrix® protocols.
| Sample_hyb_protocol | Hybridization of 10 ug cRNA to Affymetrix® GeneChip® Mouse Genome 430 2.0 arrays was carried out following standard Affymetrix® protocols.
| Sample_scan_protocol | GeneChips® were scanned using GeneChip Scanner 3000.
| Sample_data_processing | Affymetrix® microarray image data were collected with Affymetrix® GeneChip® Command Console using default parameters. We used the Expression Console Version 1.1 software for data analysis. Signal intensities were calculated with the 'rma' function using default parameters, including quantile normalization and log2 transformation.
| Sample_platform_id | GPL1261
| Sample_contact_name | Hiroshi,,Asahara
| Sample_contact_email | asahara@nch.go.jp
| Sample_contact_phone | +81-3-3417-2948
| Sample_contact_fax | +81-3-3417-2498
| Sample_contact_department | Department of Systems BioMedicine
| Sample_contact_institute | National Research Institute for Child Health and Development
| Sample_contact_address | 2-10-1 Okura
| Sample_contact_city | Setagaya
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 157-8535
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417046/suppl/GSM417046.CEL.gz
| Sample_series_id | GSE16595
| Sample_data_row_count | 45101
| |
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GSM417047 | GPL1261 |
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RP58-/-
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muscle in diaphragm
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strain: C57/BL6
tissue: skeletal muscle
developmental stage: E18.5
genotype: RP58-/-
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Gene expression data from RP58 KO mouse.
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Sample_geo_accession | GSM417047
| Sample_status | Public on Jul 31 2009
| Sample_submission_date | Jun 12 2009
| Sample_last_update_date | Jun 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA of the culture was extracted using ISOGEN (NIPPONGENE).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from total RNA following standard Affymetrix® protocols.
| Sample_hyb_protocol | Hybridization of 10 ug cRNA to Affymetrix® GeneChip® Mouse Genome 430 2.0 arrays was carried out following standard Affymetrix® protocols.
| Sample_scan_protocol | GeneChips® were scanned using GeneChip Scanner 3000.
| Sample_data_processing | Affymetrix® microarray image data were collected with Affymetrix® GeneChip® Command Console using default parameters. We used the Expression Console Version 1.1 software for data analysis. Signal intensities were calculated with the 'rma' function using default parameters, including quantile normalization and log2 transformation.
| Sample_platform_id | GPL1261
| Sample_contact_name | Hiroshi,,Asahara
| Sample_contact_email | asahara@nch.go.jp
| Sample_contact_phone | +81-3-3417-2948
| Sample_contact_fax | +81-3-3417-2498
| Sample_contact_department | Department of Systems BioMedicine
| Sample_contact_institute | National Research Institute for Child Health and Development
| Sample_contact_address | 2-10-1 Okura
| Sample_contact_city | Setagaya
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 157-8535
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417047/suppl/GSM417047.CEL.gz
| Sample_series_id | GSE16595
| Sample_data_row_count | 45101
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