Search results for the GEO ID: GSE16624  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM417405 | GPL1355 |
|
Control rep1
|
lung
|
tissue: lung
disease state: control
|
n/a
|
| Sample_geo_accession | GSM417405
| | Sample_status | Public on Jun 16 2009
| | Sample_submission_date | Jun 15 2009
| | Sample_last_update_date | Jun 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | control and aortic banding rats were kept for 9 weeks for the disease to establish
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted 9 weeks after aortic banding operation
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were processed according to One-Cycle Target Labeling protocol from GeneChip® Expression Analysis Technical Manual. 3 ug of total RNA was used as a starting material for sample preparation.
| | Sample_hyb_protocol | Each sample was hybridized at +45°C overnight (16 h) according to GeneChip® Expression Analysis Technical Manual. GeneChip® Fluidics Station 450 was used to wash and stain the arrays.
| | Sample_scan_protocol | GeneChip® Scanner 3000 with AutoLoader was used to scan the arrays. GeneChip® Operating Software (GCOS) was used to control GeneChip® Fluidics Stations and Scanner.
| | Sample_data_processing | Raw data was processed using R/Bioconductor and normalised with GC-RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ilana,,Saarikko
| | Sample_contact_institute | Genolyze Ltd
| | Sample_contact_address | Linnankatu 55
| | Sample_contact_city | Turku
| | Sample_contact_zip/postal_code | 20100
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417405/suppl/GSM417405.CEL.gz
| | Sample_series_id | GSE16624
| | Sample_data_row_count | 31099
| | |
|
GSM417406 | GPL1355 |
|
Control rep2
|
lung
|
tissue: lung
disease state: control
|
n/a
|
| Sample_geo_accession | GSM417406
| | Sample_status | Public on Jun 16 2009
| | Sample_submission_date | Jun 15 2009
| | Sample_last_update_date | Jun 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | control and aortic banding rats were kept for 9 weeks for the disease to establish
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted 9 weeks after aortic banding operation
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were processed according to One-Cycle Target Labeling protocol from GeneChip® Expression Analysis Technical Manual. 3 ug of total RNA was used as a starting material for sample preparation.
| | Sample_hyb_protocol | Each sample was hybridized at +45°C overnight (16 h) according to GeneChip® Expression Analysis Technical Manual. GeneChip® Fluidics Station 450 was used to wash and stain the arrays.
| | Sample_scan_protocol | GeneChip® Scanner 3000 with AutoLoader was used to scan the arrays. GeneChip® Operating Software (GCOS) was used to control GeneChip® Fluidics Stations and Scanner.
| | Sample_data_processing | Raw data was processed using R/Bioconductor and normalised with GC-RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ilana,,Saarikko
| | Sample_contact_institute | Genolyze Ltd
| | Sample_contact_address | Linnankatu 55
| | Sample_contact_city | Turku
| | Sample_contact_zip/postal_code | 20100
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417406/suppl/GSM417406.CEL.gz
| | Sample_series_id | GSE16624
| | Sample_data_row_count | 31099
| | |
|
GSM417407 | GPL1355 |
|
Control rep3
|
lung
|
tissue: lung
disease state: control
|
n/a
|
| Sample_geo_accession | GSM417407
| | Sample_status | Public on Jun 16 2009
| | Sample_submission_date | Jun 15 2009
| | Sample_last_update_date | Jun 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | control and aortic banding rats were kept for 9 weeks for the disease to establish
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted 9 weeks after aortic banding operation
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were processed according to One-Cycle Target Labeling protocol from GeneChip® Expression Analysis Technical Manual. 3 ug of total RNA was used as a starting material for sample preparation.
| | Sample_hyb_protocol | Each sample was hybridized at +45°C overnight (16 h) according to GeneChip® Expression Analysis Technical Manual. GeneChip® Fluidics Station 450 was used to wash and stain the arrays.
| | Sample_scan_protocol | GeneChip® Scanner 3000 with AutoLoader was used to scan the arrays. GeneChip® Operating Software (GCOS) was used to control GeneChip® Fluidics Stations and Scanner.
| | Sample_data_processing | Raw data was processed using R/Bioconductor and normalised with GC-RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ilana,,Saarikko
| | Sample_contact_institute | Genolyze Ltd
| | Sample_contact_address | Linnankatu 55
| | Sample_contact_city | Turku
| | Sample_contact_zip/postal_code | 20100
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417407/suppl/GSM417407.CEL.gz
| | Sample_series_id | GSE16624
| | Sample_data_row_count | 31099
| | |
|
GSM417408 | GPL1355 |
|
Pulmonary hypertension from CHF rep1
|
lung
|
tissue: lung
disease state: pulmonary hypertension, CHF
|
n/a
|
| Sample_geo_accession | GSM417408
| | Sample_status | Public on Jun 16 2009
| | Sample_submission_date | Jun 15 2009
| | Sample_last_update_date | Jun 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | control and aortic banding rats were kept for 9 weeks for the disease to establish
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted 9 weeks after aortic banding operation
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were processed according to One-Cycle Target Labeling protocol from GeneChip® Expression Analysis Technical Manual. 3 ug of total RNA was used as a starting material for sample preparation.
| | Sample_hyb_protocol | Each sample was hybridized at +45°C overnight (16 h) according to GeneChip® Expression Analysis Technical Manual. GeneChip® Fluidics Station 450 was used to wash and stain the arrays.
| | Sample_scan_protocol | GeneChip® Scanner 3000 with AutoLoader was used to scan the arrays. GeneChip® Operating Software (GCOS) was used to control GeneChip® Fluidics Stations and Scanner.
| | Sample_data_processing | Raw data was processed using R/Bioconductor and normalised with GC-RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ilana,,Saarikko
| | Sample_contact_institute | Genolyze Ltd
| | Sample_contact_address | Linnankatu 55
| | Sample_contact_city | Turku
| | Sample_contact_zip/postal_code | 20100
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417408/suppl/GSM417408.CEL.gz
| | Sample_series_id | GSE16624
| | Sample_data_row_count | 31099
| | |
|
GSM417409 | GPL1355 |
|
Pulmonary hypertension from CHF rep2
|
lung
|
tissue: lung
disease state: pulmonary hypertension, CHF
|
n/a
|
| Sample_geo_accession | GSM417409
| | Sample_status | Public on Jun 16 2009
| | Sample_submission_date | Jun 15 2009
| | Sample_last_update_date | Jun 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | control and aortic banding rats were kept for 9 weeks for the disease to establish
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted 9 weeks after aortic banding operation
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were processed according to One-Cycle Target Labeling protocol from GeneChip® Expression Analysis Technical Manual. 3 ug of total RNA was used as a starting material for sample preparation.
| | Sample_hyb_protocol | Each sample was hybridized at +45°C overnight (16 h) according to GeneChip® Expression Analysis Technical Manual. GeneChip® Fluidics Station 450 was used to wash and stain the arrays.
| | Sample_scan_protocol | GeneChip® Scanner 3000 with AutoLoader was used to scan the arrays. GeneChip® Operating Software (GCOS) was used to control GeneChip® Fluidics Stations and Scanner.
| | Sample_data_processing | Raw data was processed using R/Bioconductor and normalised with GC-RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ilana,,Saarikko
| | Sample_contact_institute | Genolyze Ltd
| | Sample_contact_address | Linnankatu 55
| | Sample_contact_city | Turku
| | Sample_contact_zip/postal_code | 20100
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417409/suppl/GSM417409.CEL.gz
| | Sample_series_id | GSE16624
| | Sample_data_row_count | 31099
| | |
|
GSM417410 | GPL1355 |
|
Pulmonary hypertension from CHF rep3
|
lung
|
tissue: lung
disease state: pulmonary hypertension, CHF
|
n/a
|
| Sample_geo_accession | GSM417410
| | Sample_status | Public on Jun 16 2009
| | Sample_submission_date | Jun 15 2009
| | Sample_last_update_date | Jun 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | control and aortic banding rats were kept for 9 weeks for the disease to establish
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted 9 weeks after aortic banding operation
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were processed according to One-Cycle Target Labeling protocol from GeneChip® Expression Analysis Technical Manual. 3 ug of total RNA was used as a starting material for sample preparation.
| | Sample_hyb_protocol | Each sample was hybridized at +45°C overnight (16 h) according to GeneChip® Expression Analysis Technical Manual. GeneChip® Fluidics Station 450 was used to wash and stain the arrays.
| | Sample_scan_protocol | GeneChip® Scanner 3000 with AutoLoader was used to scan the arrays. GeneChip® Operating Software (GCOS) was used to control GeneChip® Fluidics Stations and Scanner.
| | Sample_data_processing | Raw data was processed using R/Bioconductor and normalised with GC-RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ilana,,Saarikko
| | Sample_contact_institute | Genolyze Ltd
| | Sample_contact_address | Linnankatu 55
| | Sample_contact_city | Turku
| | Sample_contact_zip/postal_code | 20100
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417410/suppl/GSM417410.CEL.gz
| | Sample_series_id | GSE16624
| | Sample_data_row_count | 31099
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