Search results for the GEO ID: GSE16648  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM288491 | GPL570 |
|
HT29 sensitive cells replicate 1
|
HT29 methotrexate-sensitive cells
|
cell line: HT29
cell type: colon cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of HT29 cells sensitive to Methotrexate.
|
| Sample_geo_accession | GSM288491
| | Sample_status | Public on Sep 08 2008
| | Sample_submission_date | May 14 2008
| | Sample_last_update_date | Jun 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288491/suppl/GSM288491.CEL.gz
| | Sample_series_id | GSE11440
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM288497 | GPL570 |
|
HT29 sensitive cells replicate 2
|
HT29 methotrexate-sensitive cells
|
cell line: HT29
cell type: colon cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of HT29 cells sensitive to Methotrexate.
|
| Sample_geo_accession | GSM288497
| | Sample_status | Public on Sep 08 2008
| | Sample_submission_date | May 14 2008
| | Sample_last_update_date | Jun 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288497/suppl/GSM288497.CEL.gz
| | Sample_series_id | GSE11440
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM288499 | GPL570 |
|
HT29 sensitive cells replicate 3
|
HT29 methotrexate-sensitive cells
|
cell line: HT29
cell type: colon cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of HT29 cells sensitive to Methotrexate.
|
| Sample_geo_accession | GSM288499
| | Sample_status | Public on Sep 08 2008
| | Sample_submission_date | May 14 2008
| | Sample_last_update_date | Jun 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288499/suppl/GSM288499.CEL.gz
| | Sample_series_id | GSE11440
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM288501 | GPL570 |
|
HT29 resistant cells replicate 1
|
HT29 methotrexate-resistant cells
|
cell line: HT29
cell type: colon cancer
methotrexate sensitivity: resistant
|
Gene expression profile of HT29 cells resistant to Methotrexate.
|
| Sample_geo_accession | GSM288501
| | Sample_status | Public on Sep 08 2008
| | Sample_submission_date | May 14 2008
| | Sample_last_update_date | Jun 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288501/suppl/GSM288501.CEL.gz
| | Sample_series_id | GSE11440
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM288502 | GPL570 |
|
HT29 resistant cells replicate 2
|
HT29 methotrexate-resistant cells
|
cell line: HT29
cell type: colon cancer
methotrexate sensitivity: resistant
|
Gene expression profile of HT29 cells resistant to Methotrexate.
|
| Sample_geo_accession | GSM288502
| | Sample_status | Public on Sep 08 2008
| | Sample_submission_date | May 14 2008
| | Sample_last_update_date | Jun 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288502/suppl/GSM288502.CEL.gz
| | Sample_series_id | GSE11440
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM288536 | GPL570 |
|
HT29 resistant cells replicate 3
|
HT29 methotrexate-resistant cells
|
cell line: HT29
cell type: colon cancer
methotrexate sensitivity: resistant
|
Gene expression profile of HT29 cells resistant to Methotrexate.
|
| Sample_geo_accession | GSM288536
| | Sample_status | Public on Sep 08 2008
| | Sample_submission_date | May 14 2008
| | Sample_last_update_date | Jun 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288536/suppl/GSM288536.CEL.gz
| | Sample_series_id | GSE11440
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402370 | GPL570 |
|
Caco2 parental cells replicate 1
|
Caco2 parental cells
|
cell line: Caco2
cell type: colon cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of Caco2 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402370
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402370/suppl/GSM402370.CEL.gz
| | Sample_series_id | GSE16066
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402373 | GPL570 |
|
Caco2 parental cells replicate 2
|
Caco2 parental cells
|
cell line: Caco2
cell type: colon cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of Caco2 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402373
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402373/suppl/GSM402373.CEL.gz
| | Sample_series_id | GSE16066
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402375 | GPL570 |
|
Caco2 parental cells replicate 3
|
Caco2 parental cells
|
cell line: Caco2
cell type: colon cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of Caco2 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402375
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402375/suppl/GSM402375.CEL.gz
| | Sample_series_id | GSE16066
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402378 | GPL570 |
|
Caco2 Resistant cells replicate 1
|
Caco2 methotrexate-resistant cells
|
cell line: Caco2
cell type: colon cancer
methotrexate sensitivity: resistant
|
Gene expression profile of Caco2 cells resistant to 10e-5M methotrexate.
|
| Sample_geo_accession | GSM402378
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402378/suppl/GSM402378.CEL.gz
| | Sample_series_id | GSE16066
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402380 | GPL570 |
|
Caco2 Resistant cells replicate 2
|
Caco2 methotrexate-resistant cells
|
cell line: Caco2
cell type: colon cancer
methotrexate sensitivity: resistant
|
Gene expression profile of Caco2 cells resistant to 10e-5M methotrexate.
|
| Sample_geo_accession | GSM402380
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402380/suppl/GSM402380.CEL.gz
| | Sample_series_id | GSE16066
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402383 | GPL570 |
|
Caco2 Resistant cells replicate 3
|
Caco2 methotrexate-resistant cells
|
cell line: Caco2
cell type: colon cancer
methotrexate sensitivity: resistant
|
Gene expression profile of Caco2 cells resistant to 10e-5M methotrexate.
|
| Sample_geo_accession | GSM402383
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 plus 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 plus 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402383/suppl/GSM402383.CEL.gz
| | Sample_series_id | GSE16066
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402417 | GPL570 |
|
MCF7 parental cells replicate 1
|
MCF7 parental cells
|
cell line: MCF7
cell type: breast cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MCF7 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402417
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402417/suppl/GSM402417.CEL.gz
| | Sample_series_id | GSE16070
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402418 | GPL570 |
|
MCF7 parental cells replicate 2
|
MCF7 parental cells
|
cell line: MCF7
cell type: breast cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MCF7 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402418
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402418/suppl/GSM402418.CEL.gz
| | Sample_series_id | GSE16070
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402419 | GPL570 |
|
MCF7 parental cells replicate 3
|
MCF7 parental cells
|
cell line: MCF7
cell type: breast cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MCF7 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402419
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402419/suppl/GSM402419.CEL.gz
| | Sample_series_id | GSE16070
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402420 | GPL570 |
|
MCF7 resistant cells replicate 1
|
MCF7 methotrexate-resistant cells
|
cell line: MCF7
cell type: breast cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MCF7 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402420
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402420/suppl/GSM402420.CEL.gz
| | Sample_series_id | GSE16070
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402421 | GPL570 |
|
MCF7 resistant cells replicate 2
|
MCF7 methotrexate-resistant cells
|
cell line: MCF7
cell type: breast cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MCF7 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402421
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402421/suppl/GSM402421.CEL.gz
| | Sample_series_id | GSE16070
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402422 | GPL570 |
|
MCF7 resistant cells replicate 3
|
MCF7 methotrexate-resistant cells
|
cell line: MCF7
cell type: breast cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MCF7 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402422
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 12 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402422/suppl/GSM402422.CEL.gz
| | Sample_series_id | GSE16070
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402520 | GPL570 |
|
MDA-MB-468 parental cells replicate 1
|
MDA-MB-468 parental cells
|
cell line: MDA-MB-468
cell type: breast cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MDA-MB-468 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402520
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402520/suppl/GSM402520.CEL.gz
| | Sample_series_id | GSE16080
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402522 | GPL570 |
|
MDA-MB-468 parental cells replicate 2
|
MDA-MB-468 parental cells
|
cell line: MDA-MB-468
cell type: breast cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MDA-MB-468 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402522
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402522/suppl/GSM402522.CEL.gz
| | Sample_series_id | GSE16080
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402524 | GPL570 |
|
MDA-MB-468 parental cells replicate 3
|
MDA-MB-468 parental cells
|
cell line: MDA-MB-468
cell type: breast cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MDA-MB-468 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402524
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402524/suppl/GSM402524.CEL.gz
| | Sample_series_id | GSE16080
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402526 | GPL570 |
|
MDA-MB-468 resistant cells replicate 1
|
MDA-MB-468 methotrexate-resistant cells
|
cell line: MDA-MB-468
cell type: breast cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MDA-MB-468 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402526
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402526/suppl/GSM402526.CEL.gz
| | Sample_series_id | GSE16080
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402527 | GPL570 |
|
MDA-MB-468 resistant cells replicate 2
|
MDA-MB-468 methotrexate-resistant cells
|
cell line: MDA-MB-468
cell type: breast cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MDA-MB-468 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402527
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402527/suppl/GSM402527.CEL.gz
| | Sample_series_id | GSE16080
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402528 | GPL570 |
|
MDA-MB-468 resistant cells replicate 3
|
MDA-MB-468 methotrexate-resistant cells
|
cell line: MDA-MB-468
cell type: breast cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MDA-MB-468 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402528
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402528/suppl/GSM402528.CEL.gz
| | Sample_series_id | GSE16080
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402529 | GPL570 |
|
MIA PaCa2 parental cells replicate 1
|
MIA PaCa2 parental cells
|
cell line: MIA PaCa2
cell type: pancreatic cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MIA PaCa2 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402529
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402529/suppl/GSM402529.CEL.gz
| | Sample_series_id | GSE16082
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402531 | GPL570 |
|
MIA PaCa2 parental cells replicate 2
|
MIA PaCa2 parental cells
|
cell line: MIA PaCa2
cell type: pancreatic cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MIA PaCa2 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402531
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402531/suppl/GSM402531.CEL.gz
| | Sample_series_id | GSE16082
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402532 | GPL570 |
|
MIA PaCa2 parental cells replicate 3
|
MIA PaCa2 parental cells
|
cell line: MIA PaCa2
cell type: pancreatic cancer
methotrexate sensitivity: sensitive
|
Gene expression profile of MIA PaCa2 cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402532
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402532/suppl/GSM402532.CEL.gz
| | Sample_series_id | GSE16082
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402533 | GPL570 |
|
MIA PaCa2 resistant cells replicate 1
|
MIA PaCa2 methotrexate-resistant cells
|
cell line: MIA PaCa2
cell type: pancreatic cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MIA PaCa2 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402533
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402533/suppl/GSM402533.CEL.gz
| | Sample_series_id | GSE16082
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402534 | GPL570 |
|
MIA PaCa2 resistant cells replicate 2
|
MIA PaCa2 methotrexate-resistant cells
|
cell line: MIA PaCa2
cell type: pancreatic cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MIA PaCa2 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402534
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402534/suppl/GSM402534.CEL.gz
| | Sample_series_id | GSE16082
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402535 | GPL570 |
|
MIA PaCa2 resistant cells replicate 3
|
MIA PaCa2 methotrexate-resistant cells
|
cell line: MIA PaCa2
cell type: pancreatic cancer
methotrexate sensitivity: resistant
|
Gene expression profile of MIA PaCa2 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402535
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402535/suppl/GSM402535.CEL.gz
| | Sample_series_id | GSE16082
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402560 | GPL570 |
|
K562 parental cells replicate 1
|
K562 parental cells
|
cell line: K562
cell type: erythroblastic leukemia
methotrexate sensitivity: sensitive
|
Gene expression profile of K562 parental cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402560
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402560/suppl/GSM402560.CEL.gz
| | Sample_series_id | GSE16085
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402650 | GPL570 |
|
K562 parental cells replicate 2
|
K562 parental cells
|
cell line: K562
cell type: erythroblastic leukemia
methotrexate sensitivity: sensitive
|
Gene expression profile of K562 parental cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402650
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402650/suppl/GSM402650.CEL.gz
| | Sample_series_id | GSE16085
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402651 | GPL570 |
|
K562 parental cells replicate 3
|
K562 parental cells
|
cell line: K562
cell type: erythroblastic leukemia
methotrexate sensitivity: sensitive
|
Gene expression profile of K562 parental cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402651
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402651/suppl/GSM402651.CEL.gz
| | Sample_series_id | GSE16085
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402652 | GPL570 |
|
K562 resistant cells replicate 1
|
K562 methotrexate-resistant cells
|
cell line: K562
cell type: erythroblastic leukemia
methotrexate sensitivity: resistant
|
Gene expression profile of K562 cells resistant to 10e-5M methotrexate.
|
| Sample_geo_accession | GSM402652
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402652/suppl/GSM402652.CEL.gz
| | Sample_series_id | GSE16085
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402653 | GPL570 |
|
K562 resistant cells replicate 2
|
K562 methotrexate-resistant cells
|
cell line: K562
cell type: erythroblastic leukemia
methotrexate sensitivity: resistant
|
Gene expression profile of K562 cells resistant to 10e-5M methotrexate.
|
| Sample_geo_accession | GSM402653
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402653/suppl/GSM402653.CEL.gz
| | Sample_series_id | GSE16085
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402654 | GPL570 |
|
K562 resistant cells replicate 3
|
K562 methotrexate-resistant cells
|
cell line: K562
cell type: erythroblastic leukemia
methotrexate sensitivity: resistant
|
Gene expression profile of K562 cells resistant to 10e-5M methotrexate.
|
| Sample_geo_accession | GSM402654
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402654/suppl/GSM402654.CEL.gz
| | Sample_series_id | GSE16085
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402655 | GPL570 |
|
Saos-2 parental cells replicate 1
|
Saos-2 parental cells
|
cell line: Saos-2
cell type: osteosarcoma
methotrexate sensitivity: sensitive
|
Gene expression profile of Saos-2 parental cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402655
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402655/suppl/GSM402655.CEL.gz
| | Sample_series_id | GSE16089
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402656 | GPL570 |
|
Saos-2 parental cells replicate 2
|
Saos-2 parental cells
|
cell line: Saos-2
cell type: osteosarcoma
methotrexate sensitivity: sensitive
|
Gene expression profile of Saos-2 parental cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402656
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402656/suppl/GSM402656.CEL.gz
| | Sample_series_id | GSE16089
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402657 | GPL570 |
|
Saos-2 parental cells replicate 3
|
Saos-2 parental cells
|
cell line: Saos-2
cell type: osteosarcoma
methotrexate sensitivity: sensitive
|
Gene expression profile of Saos-2 parental cells sensitive to methotrexate.
|
| Sample_geo_accession | GSM402657
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402657/suppl/GSM402657.CEL.gz
| | Sample_series_id | GSE16089
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402681 | GPL570 |
|
Saos-2 resistant cells replicate 1
|
Saos-2 methotrexate-resistant cells
|
cell line: Saos-2
cell type: osteosarcoma
methotrexate sensitivity: resistant
|
Gene expression profile of Saos-2 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402681
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402681/suppl/GSM402681.CEL.gz
| | Sample_series_id | GSE16089
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402682 | GPL570 |
|
Saos-2 resistant cells replicate 2
|
Saos-2 methotrexate-resistant cells
|
cell line: Saos-2
cell type: osteosarcoma
methotrexate sensitivity: resistant
|
Gene expression profile of Saos-2 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402682
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402682/suppl/GSM402682.CEL.gz
| | Sample_series_id | GSE16089
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
GSM402683 | GPL570 |
|
Saos-2 resistant cells replicate 3
|
Saos-2 methotrexate-resistant cells
|
cell line: Saos-2
cell type: osteosarcoma
methotrexate sensitivity: resistant
|
Gene expression profile of Saos-2 cells resistant to 10e-6M methotrexate.
|
| Sample_geo_accession | GSM402683
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | May 13 2009
| | Sample_last_update_date | Jun 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_hyb_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_scan_protocol | Affymetrix protocol for HG U133 PLUS 2.0
| | Sample_data_processing | Value generated using MAS 5.0 non-scaled
| | Sample_platform_id | GPL570
| | Sample_contact_name | carlos,j,ciudad
| | Sample_contact_email | cciudad@ub.edu
| | Sample_contact_phone | +34-93-403-4455
| | Sample_contact_fax | +34-93-402-4520
| | Sample_contact_laboratory | school of pharmacy
| | Sample_contact_department | biochemistry and molecular biology
| | Sample_contact_institute | university of barcelona
| | Sample_contact_address | av. diagonal 643
| | Sample_contact_city | barcelona
| | Sample_contact_state | barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402683/suppl/GSM402683.CEL.gz
| | Sample_series_id | GSE16089
| | Sample_series_id | GSE16648
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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