Search results for the GEO ID: GSE16677  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM417985 | GPL570 |
|
DS-AMKL01
|
DS-AMKL sample 1, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: Down Syndrome-AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417985
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417985/suppl/GSM417985.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417986 | GPL570 |
|
DS-AMKL02
|
DS-AMKL sample 2, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: Down Syndrome-AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417986
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417986/suppl/GSM417986.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417987 | GPL570 |
|
DS-AMKL03
|
DS-AMKL sample 3, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: Down Syndrome-AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417987
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417987/suppl/GSM417987.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417988 | GPL570 |
|
DS-AMKL04
|
DS-AMKL sample 4, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: Down Syndrome-AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417988
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417988/suppl/GSM417988.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417989 | GPL570 |
|
DS-AMKL05
|
DS-AMKL sample 5, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: Down Syndrome-AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417989
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417989/suppl/GSM417989.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417990 | GPL570 |
|
DS-AMKL06
|
DS-AMKL sample 6, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: Down Syndrome-AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417990
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417990/suppl/GSM417990.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417991 | GPL570 |
|
Non-DS AMKL01
|
Non-DS AMKL sample 1, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417991
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417991/suppl/GSM417991.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417992 | GPL570 |
|
Non-DS AMKL02
|
Non-DS AMKL sample 2, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417992
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417992/suppl/GSM417992.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417993 | GPL570 |
|
Non-DS AMKL03
|
Non-DS AMKL sample 3, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417993
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417993/suppl/GSM417993.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417994 | GPL570 |
|
Non-DS AMKL04
|
Non-DS AMKL sample 4, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417994
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417994/suppl/GSM417994.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417995 | GPL570 |
|
Non-DS AMKL05
|
Non-DS AMKL sample 5, sorted blasts
|
cell type: megakaryocytic leukemia blasts
disease: AMKL
cell description: FACS sorted leukemic blasts from patients
|
Gene expression data from sorted primary leukemic cells.
|
| Sample_geo_accession | GSM417995
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417995/suppl/GSM417995.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417996 | GPL570 |
|
16UT-7
|
Non-DS AMKL cell line UT-7
|
cell line: UT-7
cell description: AMKL cell line
|
Gene expression data from a non-DS AMKL cell line.
|
| Sample_geo_accession | GSM417996
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417996/suppl/GSM417996.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417997 | GPL570 |
|
17CMK
|
DS-AMKL cell line CMK
|
cell line: CMK
cell description: DS-AMKL cell line
|
Gene expression data from a DS-AMKL cell line.
|
| Sample_geo_accession | GSM417997
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417997/suppl/GSM417997.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417998 | GPL570 |
|
18UT-7
|
Non-DS AMKL cell line UT-7
|
cell line: UT-7
cell description: AMKL cell line
|
Gene expression data from a non-DS AMKL cell line.
|
| Sample_geo_accession | GSM417998
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417998/suppl/GSM417998.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM417999 | GPL570 |
|
19CMK
|
DS-AMKL cell line CMK
|
cell line: CMK
cell description: DS-AMKL cell line
|
Gene expression data from a DS-AMKL cell line.
|
| Sample_geo_accession | GSM417999
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM417nnn/GSM417999/suppl/GSM417999.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM418000 | GPL570 |
|
22Meg01
|
AMKL cell line Meg01
|
cell line: Meg01
cell description: AMKL cell line
|
Gene expression data from a non-DS AMKL cell line.
|
| Sample_geo_accession | GSM418000
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418000/suppl/GSM418000.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM418001 | GPL570 |
|
23M07
|
AMKL cell line M07
|
cell line: M07
cell description: AMKL cell line
|
Gene expression data from a non-DS AMKL cell line.
|
| Sample_geo_accession | GSM418001
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418001/suppl/GSM418001.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
GSM418002 | GPL570 |
|
24K562
|
Erythroleukemia cell line K562
|
cell line: K562
cell description: Erythroleukemia cell line
|
Gene expression data from a erythroleukemia cell line.
|
| Sample_geo_accession | GSM418002
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Jun 17 2009
| | Sample_last_update_date | Jul 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | Cell lines were grown in RPMI1640+15%FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by cleaning up using columns from the Promega SV total RNA isolation kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | The fragmented cRNA was added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to U133 Plus 2.0 chips overnight at 45°C. The chips were then transferred to a fluidics instrument that performs washes to remove cRNA that had not hybridized to its complementary oligonucleotide probe. The bound cRNA was then fluorescently labeled using phycoerythrin-conjugated streptavidin (SAPE); additional fluors were then added using biotinylated anti-streptavidin antibody and additional SAPE.
| | Sample_scan_protocol | Each cRNA bound at its complementary oligonucleotide was excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured.
| | Sample_data_processing | The raw CEL files were imported into dChip and normalized with dChip. After normalization, the model-based expression values were calculated by dChip and exported.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Zhe,,Li
| | Sample_contact_email | li@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617-919-2052
| | Sample_contact_laboratory | Stuart Orkin's Lab
| | Sample_contact_department | Division of Hematology/Oncology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address |
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418002/suppl/GSM418002.CEL.gz
| | Sample_series_id | GSE16655
| | Sample_series_id | GSE16677
| | Sample_data_row_count | 54613
| | |
|
| |
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