Search results for the GEO ID: GSE16715  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM418744 | GPL570 |
|
1104_CNTL
|
1104, control, skin fibroblasts
|
cell line: 1104, control, skin fibroblasts
gender: female
age at biopsy: 3 years
|
1104_CNTL
|
| Sample_geo_accession | GSM418744
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418744/suppl/GSM418744.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418745 | GPL570 |
|
2433_CNTL
|
2433, control, skin fibroblasts
|
cell line: 2433, control, skin fibroblasts
gender: female
age at biopsy: 5 years
|
2433_CNTL
|
| Sample_geo_accession | GSM418745
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418745/suppl/GSM418745.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418746 | GPL570 |
|
5042_CNTL
|
5042, control, skin fibroblasts
|
cell line: 5042, control, skin fibroblasts
gender: female
age at biopsy: 8 years
|
5042_CNTL
|
| Sample_geo_accession | GSM418746
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418746/suppl/GSM418746.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418747 | GPL570 |
|
5290_CNTL
|
5290, control, skin fibroblasts
|
cell line: 5290, control, skin fibroblasts
gender: female
age at biopsy: 7 years
|
5290_CNTL
|
| Sample_geo_accession | GSM418747
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418747/suppl/GSM418747.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418748 | GPL570 |
|
5850_CNTL
|
5850, control, skin fibroblasts
|
cell line: 5850, control, skin fibroblasts
gender: female
age at biopsy: 3 years
|
5850_CNTL
|
| Sample_geo_accession | GSM418748
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418748/suppl/GSM418748.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418749 | GPL570 |
|
6089_CNTL
|
6089, control, skin fibroblasts
|
cell line: 6089, control, skin fibroblasts
gender: female
age at biopsy: 4 years
|
6089_CNTL
|
| Sample_geo_accession | GSM418749
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418749/suppl/GSM418749.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418750 | GPL570 |
|
8495_CNTL
|
8495, control, skin fibroblasts
|
cell line: 8495, control, skin fibroblasts
gender: female
age at biopsy: 5 years
|
8495_CNTL
|
| Sample_geo_accession | GSM418750
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418750/suppl/GSM418750.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418751 | GPL570 |
|
9118_CNTL
|
9118, control, skin fibroblasts
|
cell line: 9118, control, skin fibroblasts
gender: female
age at biopsy: 5 years
|
9118_CNTL
|
| Sample_geo_accession | GSM418751
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418751/suppl/GSM418751.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418752 | GPL570 |
|
9837_CNTL
|
9837, control, skin fibroblasts
|
cell line: 9837, control, skin fibroblasts
gender: female
age at biopsy: 3 years
|
9837_CNTL
|
| Sample_geo_accession | GSM418752
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418752/suppl/GSM418752.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418753 | GPL570 |
|
4319_WBS
|
4319, WBS, skin fibroblasts
|
cell line: 4319, WBS, skin fibroblasts
microdeletion: del(7q11.23)
gender: female
age at biopsy: 8 years
|
4319_WBS
|
| Sample_geo_accession | GSM418753
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418753/suppl/GSM418753.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418754 | GPL570 |
|
10358_WBS
|
10358, WBS, skin fibroblasts
|
cell line: 10358, WBS, skin fibroblasts
microdeletion: del(7q11.23)
gender: female
age at biopsy: 7 years
|
10358_WBS
|
| Sample_geo_accession | GSM418754
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418754/suppl/GSM418754.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418755 | GPL570 |
|
10590_WBS
|
10590, WBS, skin fibroblasts
|
cell line: 10590, WBS, skin fibroblasts
microdeletion: del(7q11.23)
gender: female
age at biopsy: 3 years
|
10590_WBS
|
| Sample_geo_accession | GSM418755
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418755/suppl/GSM418755.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418756 | GPL570 |
|
D890_WBS
|
D890, WBS, skin fibroblasts
|
cell line: D890, WBS, skin fibroblasts
microdeletion: del(7q11.23)
gender: female
age at biopsy: 3 years
|
D890_WBS
|
| Sample_geo_accession | GSM418756
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418756/suppl/GSM418756.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418757 | GPL570 |
|
F055_WBS
|
F055, WBS, skin fibroblasts
|
cell line: F055, WBS, skin fibroblasts
microdeletion: del(7q11.23)
gender: female
age at biopsy: 4 years
|
F055_WBS
|
| Sample_geo_accession | GSM418757
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418757/suppl/GSM418757.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418758 | GPL570 |
|
F223_WBS
|
F223, WBS, skin fibroblasts
|
cell line: F223, WBS, skin fibroblasts
microdeletion: del(7q11.23)
gender: female
age at biopsy: 4 years
|
F223_WBS
|
| Sample_geo_accession | GSM418758
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418758/suppl/GSM418758.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418759 | GPL570 |
|
F348_WBS
|
F348, WBS, skin fibroblasts
|
cell line: F348, WBS, skin fibroblasts
microdeletion: del(7q11.23)
gender: female
age at biopsy: 3 years
|
F348_WBS
|
| Sample_geo_accession | GSM418759
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418759/suppl/GSM418759.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
|
GSM418760 | GPL570 |
|
H652_WBS
|
H652, WBS, skin fibroblasts
|
cell line: H652, WBS, skin fibroblasts
microdeletion: del(7q11.23)
gender: female
age at biopsy: 7 years
|
H652_WBS
|
| Sample_geo_accession | GSM418760
| | Sample_status | Public on Jan 31 2011
| | Sample_submission_date | Jun 19 2009
| | Sample_last_update_date | Jan 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used to perform the chiparray experiment according to the Affymetrix Gene Expression procedure.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor “affy” and “affyPLM” packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charlotte,N.,Henrichsen
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Quartier Sorge
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM418nnn/GSM418760/suppl/GSM418760.CEL.gz
| | Sample_series_id | GSE16715
| | Sample_data_row_count | 54675
| | |
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