Search results for the GEO ID: GSE16751  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM419953 | GPL1261 |
|
AID-/- leukemia biological replicate 1
|
AID-/- leukemia biological replicate 1
|
strain: Balb/c
cell type: AID-/- leukemia cells
|
n/a
|
| Sample_geo_accession | GSM419953
| | Sample_status | Public on Jun 24 2009
| | Sample_submission_date | Jun 23 2009
| | Sample_last_update_date | Jun 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemia cells using Rneasy columns per manufacturers instructions (Qiagen, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite using RMA as normalization method with a FDR of less than 0.05.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Markus,,Muschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_laboratory | Muschen
| | Sample_contact_department | Hematology Oncology
| | Sample_contact_institute | Childrens Hospital Los Angeles
| | Sample_contact_address | 4650 Sunset Blvd MS 136
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419953/suppl/GSM419953.CEL.gz
| | Sample_series_id | GSE16751
| | Sample_data_row_count | 45101
| | |
|
GSM419954 | GPL1261 |
|
AID-/- leukemia biological replicate 2
|
AID-/- leukemia biological replicate 2
|
strain: Balb/c
cell type: AID-/- leukemia cells
|
n/a
|
| Sample_geo_accession | GSM419954
| | Sample_status | Public on Jun 24 2009
| | Sample_submission_date | Jun 23 2009
| | Sample_last_update_date | Jun 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemia cells using Rneasy columns per manufacturers instructions (Qiagen, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite using RMA as normalization method with a FDR of less than 0.05.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Markus,,Muschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_laboratory | Muschen
| | Sample_contact_department | Hematology Oncology
| | Sample_contact_institute | Childrens Hospital Los Angeles
| | Sample_contact_address | 4650 Sunset Blvd MS 136
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419954/suppl/GSM419954.CEL.gz
| | Sample_series_id | GSE16751
| | Sample_data_row_count | 45101
| | |
|
GSM419955 | GPL1261 |
|
AID-/- leukemia biological replicate 3
|
AID-/- leukemia biological replicate 3
|
strain: Balb/c
cell type: AID-/- leukemia cells
|
n/a
|
| Sample_geo_accession | GSM419955
| | Sample_status | Public on Jun 24 2009
| | Sample_submission_date | Jun 23 2009
| | Sample_last_update_date | Jun 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemia cells using Rneasy columns per manufacturers instructions (Qiagen, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite using RMA as normalization method with a FDR of less than 0.05.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Markus,,Muschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_laboratory | Muschen
| | Sample_contact_department | Hematology Oncology
| | Sample_contact_institute | Childrens Hospital Los Angeles
| | Sample_contact_address | 4650 Sunset Blvd MS 136
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419955/suppl/GSM419955.CEL.gz
| | Sample_series_id | GSE16751
| | Sample_data_row_count | 45101
| | |
|
GSM419956 | GPL1261 |
|
AID+/+ leukemia biological replicate 1
|
AID+/+ leukemia biological replicate 1
|
strain: Balb/c
cell type: AID+/+ leukemia cells
|
n/a
|
| Sample_geo_accession | GSM419956
| | Sample_status | Public on Jun 24 2009
| | Sample_submission_date | Jun 23 2009
| | Sample_last_update_date | Jun 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemia cells using Rneasy columns per manufacturers instructions (Qiagen, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite using RMA as normalization method with a FDR of less than 0.05.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Markus,,Muschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_laboratory | Muschen
| | Sample_contact_department | Hematology Oncology
| | Sample_contact_institute | Childrens Hospital Los Angeles
| | Sample_contact_address | 4650 Sunset Blvd MS 136
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419956/suppl/GSM419956.CEL.gz
| | Sample_series_id | GSE16751
| | Sample_data_row_count | 45101
| | |
|
GSM419957 | GPL1261 |
|
AID+/+ leukemia biological replicate 2
|
AID+/+ leukemia biological replicate 2
|
strain: Balb/c
cell type: AID+/+ leukemia cells
|
n/a
|
| Sample_geo_accession | GSM419957
| | Sample_status | Public on Jun 24 2009
| | Sample_submission_date | Jun 23 2009
| | Sample_last_update_date | Jun 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemia cells using Rneasy columns per manufacturers instructions (Qiagen, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite using RMA as normalization method with a FDR of less than 0.05.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Markus,,Muschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_laboratory | Muschen
| | Sample_contact_department | Hematology Oncology
| | Sample_contact_institute | Childrens Hospital Los Angeles
| | Sample_contact_address | 4650 Sunset Blvd MS 136
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419957/suppl/GSM419957.CEL.gz
| | Sample_series_id | GSE16751
| | Sample_data_row_count | 45101
| | |
|
GSM419958 | GPL1261 |
|
AID+/+ leukemia biological replicate 3
|
AID+/+ leukemia biological replicate 3
|
strain: Balb/c
cell type: AID+/+ leukemia cells
|
n/a
|
| Sample_geo_accession | GSM419958
| | Sample_status | Public on Jun 24 2009
| | Sample_submission_date | Jun 23 2009
| | Sample_last_update_date | Jun 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemia cells using Rneasy columns per manufacturers instructions (Qiagen, Valencia, CA)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite using RMA as normalization method with a FDR of less than 0.05.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Markus,,Muschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_laboratory | Muschen
| | Sample_contact_department | Hematology Oncology
| | Sample_contact_institute | Childrens Hospital Los Angeles
| | Sample_contact_address | 4650 Sunset Blvd MS 136
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419958/suppl/GSM419958.CEL.gz
| | Sample_series_id | GSE16751
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
