Search results for the GEO ID: GSE16755 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM419987 | GPL570 |
|
control cell donor 1
|
primary macrophages, control
|
cell type: monocyte-derived macrophage
agent: control
|
RNA from healthy donor
|
Sample_geo_accession | GSM419987
| Sample_status | Public on Jun 29 2009
| Sample_submission_date | Jun 23 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were mock-treated or treated with IFNalpha for 4 hours.
| Sample_growth_protocol_ch1 | Monocytes plated 6x10^6/well of 6 well plate in DMEM. 10% FCS added after 4 hours and left to differentiate 7 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extraction using Qiagen Rneasy mini-kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Teresa,,Wild
| Sample_contact_email | twild@dir.nidcr.nih.gov
| Sample_contact_phone | 301-496-5796
| Sample_contact_fax | 301-402-1064
| Sample_contact_laboratory | OIIB
| Sample_contact_department | NIDCR
| Sample_contact_institute | NIH
| Sample_contact_address | 30 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419987/suppl/GSM419987.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16755
| Sample_data_row_count | 54675
| |
|
GSM419988 | GPL570 |
|
control cell donor 2
|
primary macrophages, control
|
cell type: monocyte-derived macrophage
agent: control
|
RNA from healthy donor
|
Sample_geo_accession | GSM419988
| Sample_status | Public on Jun 29 2009
| Sample_submission_date | Jun 23 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were mock-treated or treated with IFNalpha for 4 hours.
| Sample_growth_protocol_ch1 | Monocytes plated 6x10^6/well of 6 well plate in DMEM. 10% FCS added after 4 hours and left to differentiate 7 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extraction using Qiagen Rneasy mini-kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Teresa,,Wild
| Sample_contact_email | twild@dir.nidcr.nih.gov
| Sample_contact_phone | 301-496-5796
| Sample_contact_fax | 301-402-1064
| Sample_contact_laboratory | OIIB
| Sample_contact_department | NIDCR
| Sample_contact_institute | NIH
| Sample_contact_address | 30 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419988/suppl/GSM419988.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16755
| Sample_data_row_count | 54675
| |
|
GSM419989 | GPL570 |
|
control cell donor 3
|
primary macrophages, control
|
cell type: monocyte-derived macrophage
agent: control
|
RNA from healthy donor
|
Sample_geo_accession | GSM419989
| Sample_status | Public on Jun 29 2009
| Sample_submission_date | Jun 23 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were mock-treated or treated with IFNalpha for 4 hours.
| Sample_growth_protocol_ch1 | Monocytes plated 6x10^6/well of 6 well plate in DMEM. 10% FCS added after 4 hours and left to differentiate 7 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extraction using Qiagen Rneasy mini-kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Teresa,,Wild
| Sample_contact_email | twild@dir.nidcr.nih.gov
| Sample_contact_phone | 301-496-5796
| Sample_contact_fax | 301-402-1064
| Sample_contact_laboratory | OIIB
| Sample_contact_department | NIDCR
| Sample_contact_institute | NIH
| Sample_contact_address | 30 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419989/suppl/GSM419989.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16755
| Sample_data_row_count | 54675
| |
|
GSM419990 | GPL570 |
|
IFNa treated donor 1
|
primary macrophages, IFNa-treated
|
cell type: monocyte-derived macrophage
agent: IFNalpha
|
RNA from healthy donor
|
Sample_geo_accession | GSM419990
| Sample_status | Public on Jun 29 2009
| Sample_submission_date | Jun 23 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were mock-treated or treated with IFNalpha for 4 hours.
| Sample_growth_protocol_ch1 | Monocytes plated 6x10^6/well of 6 well plate in DMEM. 10% FCS added after 4 hours and left to differentiate 7 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extraction using Qiagen Rneasy mini-kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Teresa,,Wild
| Sample_contact_email | twild@dir.nidcr.nih.gov
| Sample_contact_phone | 301-496-5796
| Sample_contact_fax | 301-402-1064
| Sample_contact_laboratory | OIIB
| Sample_contact_department | NIDCR
| Sample_contact_institute | NIH
| Sample_contact_address | 30 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419990/suppl/GSM419990.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16755
| Sample_data_row_count | 54675
| |
|
GSM419991 | GPL570 |
|
IFNa treated donor 2
|
primary macrophages, IFNa-treated
|
cell type: monocyte-derived macrophage
agent: IFNalpha
|
RNA from healthy donor
|
Sample_geo_accession | GSM419991
| Sample_status | Public on Jun 29 2009
| Sample_submission_date | Jun 23 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were mock-treated or treated with IFNalpha for 4 hours.
| Sample_growth_protocol_ch1 | Monocytes plated 6x10^6/well of 6 well plate in DMEM. 10% FCS added after 4 hours and left to differentiate 7 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extraction using Qiagen Rneasy mini-kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Teresa,,Wild
| Sample_contact_email | twild@dir.nidcr.nih.gov
| Sample_contact_phone | 301-496-5796
| Sample_contact_fax | 301-402-1064
| Sample_contact_laboratory | OIIB
| Sample_contact_department | NIDCR
| Sample_contact_institute | NIH
| Sample_contact_address | 30 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419991/suppl/GSM419991.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16755
| Sample_data_row_count | 54675
| |
|
GSM419992 | GPL570 |
|
IFNa treated donor 3
|
primary macrophages, IFNa-treated
|
cell type: monocyte-derived macrophage
agent: IFNalpha
|
RNA from healthy donor
|
Sample_geo_accession | GSM419992
| Sample_status | Public on Jun 29 2009
| Sample_submission_date | Jun 23 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were mock-treated or treated with IFNalpha for 4 hours.
| Sample_growth_protocol_ch1 | Monocytes plated 6x10^6/well of 6 well plate in DMEM. 10% FCS added after 4 hours and left to differentiate 7 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extraction using Qiagen Rneasy mini-kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Affymetrix Microarray Suite version 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Teresa,,Wild
| Sample_contact_email | twild@dir.nidcr.nih.gov
| Sample_contact_phone | 301-496-5796
| Sample_contact_fax | 301-402-1064
| Sample_contact_laboratory | OIIB
| Sample_contact_department | NIDCR
| Sample_contact_institute | NIH
| Sample_contact_address | 30 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM419nnn/GSM419992/suppl/GSM419992.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16755
| Sample_data_row_count | 54675
| |
|
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