Search results for the GEO ID: GSE16836 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM422109 | GPL570 |
|
Peripheral blood monocytes, CD16 negative, rep1
|
peripheral blood monocytes, CD16-
|
donor health: healthy
tissue: peripheral blood
cell type: monocyte
cd16: negative
|
Gene expression data ex vivo.
042904_CD16_negative
|
Sample_geo_accession | GSM422109
| Sample_status | Public on Aug 31 2009
| Sample_submission_date | Jun 25 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | ex vivo
| Sample_growth_protocol_ch1 | ex vivo
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from Mo pellets was isolated by Trizol extraction and purified using RNeasy columns (Qiagen). The quality of RNA was assessed by visualization of intact bands corresponding to 18S and 28S rRNA on formaldehyde agarose gels.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array (Platform ID: GPL570). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Petronela,,ANCUTA
| Sample_contact_email | petronela.ancuta@umontreal.ca
| Sample_contact_phone | 5148908000
| Sample_contact_fax | 514-412-7377
| Sample_contact_laboratory | Chemokines and HIV
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Université de Montréal
| Sample_contact_address | 264, BVD Rene-Levesque East
| Sample_contact_city | Montreal
| Sample_contact_state | Quebec
| Sample_contact_zip/postal_code | H2X 1P1
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422109/suppl/GSM422109.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422109/suppl/GSM422109.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16836
| Sample_data_row_count | 54675
| |
|
GSM422110 | GPL570 |
|
Peripheral blood monocytes, CD16 negative, rep2
|
peripheral blood monocytes, CD16-
|
donor health: healthy
tissue: peripheral blood
cell type: monocyte
cd16: negative
|
Gene expression data ex vivo.
052104_CD16_negative
|
Sample_geo_accession | GSM422110
| Sample_status | Public on Aug 31 2009
| Sample_submission_date | Jun 25 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | ex vivo
| Sample_growth_protocol_ch1 | ex vivo
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from Mo pellets was isolated by Trizol extraction and purified using RNeasy columns (Qiagen). The quality of RNA was assessed by visualization of intact bands corresponding to 18S and 28S rRNA on formaldehyde agarose gels.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array (Platform ID: GPL570). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Petronela,,ANCUTA
| Sample_contact_email | petronela.ancuta@umontreal.ca
| Sample_contact_phone | 5148908000
| Sample_contact_fax | 514-412-7377
| Sample_contact_laboratory | Chemokines and HIV
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Université de Montréal
| Sample_contact_address | 264, BVD Rene-Levesque East
| Sample_contact_city | Montreal
| Sample_contact_state | Quebec
| Sample_contact_zip/postal_code | H2X 1P1
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422110/suppl/GSM422110.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422110/suppl/GSM422110.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16836
| Sample_data_row_count | 54675
| |
|
GSM422111 | GPL570 |
|
Peripheral blood monocytes, CD16 negative, rep3
|
peripheral blood monocytes, CD16-
|
donor health: healthy
tissue: peripheral blood
cell type: monocyte
cd16: negative
|
Gene expression data ex vivo.
021904_CD16_negative
|
Sample_geo_accession | GSM422111
| Sample_status | Public on Aug 31 2009
| Sample_submission_date | Jun 25 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | ex vivo
| Sample_growth_protocol_ch1 | ex vivo
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from Mo pellets was isolated by Trizol extraction and purified using RNeasy columns (Qiagen). The quality of RNA was assessed by visualization of intact bands corresponding to 18S and 28S rRNA on formaldehyde agarose gels.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array (Platform ID: GPL570). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Petronela,,ANCUTA
| Sample_contact_email | petronela.ancuta@umontreal.ca
| Sample_contact_phone | 5148908000
| Sample_contact_fax | 514-412-7377
| Sample_contact_laboratory | Chemokines and HIV
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Université de Montréal
| Sample_contact_address | 264, BVD Rene-Levesque East
| Sample_contact_city | Montreal
| Sample_contact_state | Quebec
| Sample_contact_zip/postal_code | H2X 1P1
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422111/suppl/GSM422111.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422111/suppl/GSM422111.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16836
| Sample_data_row_count | 54675
| |
|
GSM422112 | GPL570 |
|
Peripheral blood monocytes, CD16 negative, rep4
|
peripheral blood monocytes, CD16-
|
donor health: healthy
tissue: peripheral blood
cell type: monocyte
cd16: negative
|
Gene expression data ex vivo.
042304_CD16_negative
|
Sample_geo_accession | GSM422112
| Sample_status | Public on Aug 31 2009
| Sample_submission_date | Jun 25 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | ex vivo
| Sample_growth_protocol_ch1 | ex vivo
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from Mo pellets was isolated by Trizol extraction and purified using RNeasy columns (Qiagen). The quality of RNA was assessed by visualization of intact bands corresponding to 18S and 28S rRNA on formaldehyde agarose gels.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array (Platform ID: GPL570). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Petronela,,ANCUTA
| Sample_contact_email | petronela.ancuta@umontreal.ca
| Sample_contact_phone | 5148908000
| Sample_contact_fax | 514-412-7377
| Sample_contact_laboratory | Chemokines and HIV
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Université de Montréal
| Sample_contact_address | 264, BVD Rene-Levesque East
| Sample_contact_city | Montreal
| Sample_contact_state | Quebec
| Sample_contact_zip/postal_code | H2X 1P1
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422112/suppl/GSM422112.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422112/suppl/GSM422112.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16836
| Sample_data_row_count | 54675
| |
|
GSM422113 | GPL570 |
|
Peripheral blood monocytes, CD16 positive, rep1
|
peripheral blood monocytes, CD16+
|
donor health: healthy
tissue: peripheral blood
cell type: monocyte
cd16: positive
|
Gene expression data ex vivo.
042904_CD16_positive
|
Sample_geo_accession | GSM422113
| Sample_status | Public on Aug 31 2009
| Sample_submission_date | Jun 25 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | ex vivo
| Sample_growth_protocol_ch1 | ex vivo
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from Mo pellets was isolated by Trizol extraction and purified using RNeasy columns (Qiagen). The quality of RNA was assessed by visualization of intact bands corresponding to 18S and 28S rRNA on formaldehyde agarose gels.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array (Platform ID: GPL570). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Petronela,,ANCUTA
| Sample_contact_email | petronela.ancuta@umontreal.ca
| Sample_contact_phone | 5148908000
| Sample_contact_fax | 514-412-7377
| Sample_contact_laboratory | Chemokines and HIV
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Université de Montréal
| Sample_contact_address | 264, BVD Rene-Levesque East
| Sample_contact_city | Montreal
| Sample_contact_state | Quebec
| Sample_contact_zip/postal_code | H2X 1P1
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422113/suppl/GSM422113.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422113/suppl/GSM422113.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16836
| Sample_data_row_count | 54675
| |
|
GSM422114 | GPL570 |
|
Peripheral blood monocytes, CD16 positive, rep2
|
peripheral blood monocytes, CD16+
|
donor health: healthy
tissue: peripheral blood
cell type: monocyte
cd16: positive
|
Gene expression data ex vivo.
052104_CD16_positive
|
Sample_geo_accession | GSM422114
| Sample_status | Public on Aug 31 2009
| Sample_submission_date | Jun 25 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | ex vivo
| Sample_growth_protocol_ch1 | ex vivo
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from Mo pellets was isolated by Trizol extraction and purified using RNeasy columns (Qiagen). The quality of RNA was assessed by visualization of intact bands corresponding to 18S and 28S rRNA on formaldehyde agarose gels.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array (Platform ID: GPL570). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Petronela,,ANCUTA
| Sample_contact_email | petronela.ancuta@umontreal.ca
| Sample_contact_phone | 5148908000
| Sample_contact_fax | 514-412-7377
| Sample_contact_laboratory | Chemokines and HIV
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Université de Montréal
| Sample_contact_address | 264, BVD Rene-Levesque East
| Sample_contact_city | Montreal
| Sample_contact_state | Quebec
| Sample_contact_zip/postal_code | H2X 1P1
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422114/suppl/GSM422114.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422114/suppl/GSM422114.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16836
| Sample_data_row_count | 54675
| |
|
GSM422115 | GPL570 |
|
Peripheral blood monocytes, CD16 positive, rep3
|
peripheral blood monocytes, CD16+
|
donor health: healthy
tissue: peripheral blood
cell type: monocyte
cd16: positive
|
Gene expression data ex vivo.
021904_CD16_positive
|
Sample_geo_accession | GSM422115
| Sample_status | Public on Aug 31 2009
| Sample_submission_date | Jun 25 2009
| Sample_last_update_date | Jul 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | ex vivo
| Sample_growth_protocol_ch1 | ex vivo
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from Mo pellets was isolated by Trizol extraction and purified using RNeasy columns (Qiagen). The quality of RNA was assessed by visualization of intact bands corresponding to 18S and 28S rRNA on formaldehyde agarose gels.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array (Platform ID: GPL570). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Petronela,,ANCUTA
| Sample_contact_email | petronela.ancuta@umontreal.ca
| Sample_contact_phone | 5148908000
| Sample_contact_fax | 514-412-7377
| Sample_contact_laboratory | Chemokines and HIV
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Université de Montréal
| Sample_contact_address | 264, BVD Rene-Levesque East
| Sample_contact_city | Montreal
| Sample_contact_state | Quebec
| Sample_contact_zip/postal_code | H2X 1P1
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422115/suppl/GSM422115.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422115/suppl/GSM422115.CHP.gz
| Sample_series_id | GSE16836
| Sample_data_row_count | 54675
| |
|
GSM422116 | GPL570 |
|
Peripheral blood monocytes, CD16 positive, rep4
|
peripheral blood monocytes, CD16+
|
donor health: healthy
tissue: peripheral blood
cell type: monocyte
cd16: positive
|
Gene expression data ex vivo.
042304_CD16_positive
|
Sample_geo_accession | GSM422116
| Sample_status | Public on Aug 31 2009
| Sample_submission_date | Jun 25 2009
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | ex vivo
| Sample_growth_protocol_ch1 | ex vivo
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from Mo pellets was isolated by Trizol extraction and purified using RNeasy columns (Qiagen). The quality of RNA was assessed by visualization of intact bands corresponding to 18S and 28S rRNA on formaldehyde agarose gels.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array (Platform ID: GPL570). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Petronela,,ANCUTA
| Sample_contact_email | petronela.ancuta@umontreal.ca
| Sample_contact_phone | 5148908000
| Sample_contact_fax | 514-412-7377
| Sample_contact_laboratory | Chemokines and HIV
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Université de Montréal
| Sample_contact_address | 264, BVD Rene-Levesque East
| Sample_contact_city | Montreal
| Sample_contact_state | Quebec
| Sample_contact_zip/postal_code | H2X 1P1
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422116/suppl/GSM422116.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM422nnn/GSM422116/suppl/GSM422116.CHP.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE16836
| Sample_data_row_count | 54675
| |
|
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