Search results for the GEO ID: GSE17032  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM426257 | GPL570 |
|
AG05416
|
AG05416
|
age: 42
sex: M
race: cau
tissue.origin: Skin
|
AG05416 fibroblast cell line
|
| Sample_geo_accession | GSM426257
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426257/suppl/GSM426257.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426258 | GPL570 |
|
AG11364
|
AG11364
|
age: 51
sex: M
race: cau
tissue.origin: Skin
|
AG11364 fibroblast cell line
|
| Sample_geo_accession | GSM426258
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426258/suppl/GSM426258.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426259 | GPL570 |
|
AG13145
|
AG13145
|
age: 57
sex: M
race: cau
tissue.origin: Skin
|
AG13145 fibroblast cell line
|
| Sample_geo_accession | GSM426259
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426259/suppl/GSM426259.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426260 | GPL570 |
|
AG04147
|
AG04147
|
age: 49
sex: M
race: cau
tissue.origin: Skin
|
AG04147 fibroblast cell line
|
| Sample_geo_accession | GSM426260
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426260/suppl/GSM426260.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426261 | GPL570 |
|
AG04351
|
AG04351
|
age: 44
sex: M
race: cau
tissue.origin: Skin
|
AG04351 fibroblast cell line
|
| Sample_geo_accession | GSM426261
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426261/suppl/GSM426261.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426262 | GPL570 |
|
AG04655
|
AG04655
|
age: 49
sex: M
race: cau
tissue.origin: Skin
|
AG04655 fibroblast cell line
|
| Sample_geo_accession | GSM426262
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426262/suppl/GSM426262.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426263 | GPL570 |
|
AG06237
|
AG06237
|
age: 45
sex: M
race: cau
tissue.origin: Skin
|
AG06237 fibroblast cell line
|
| Sample_geo_accession | GSM426263
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426263/suppl/GSM426263.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426264 | GPL570 |
|
AG07139
|
AG07139
|
age: 53
sex: F
race: cau
tissue.origin: Skin
|
AG07139 fibroblast cell line
|
| Sample_geo_accession | GSM426264
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426264/suppl/GSM426264.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426265 | GPL570 |
|
AG07307
|
AG07307
|
age: 40
sex: F
race: cau
tissue.origin: Skin
|
AG07307 fibroblast cell line
|
| Sample_geo_accession | GSM426265
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426265/suppl/GSM426265.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426266 | GPL570 |
|
AG08046
|
AG08046
|
age: 51
sex: F
race: cau
tissue.origin: Skin
|
AG08046 fibroblast cell line
|
| Sample_geo_accession | GSM426266
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426266/suppl/GSM426266.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426267 | GPL570 |
|
AG08048
|
AG08048
|
age: 46
sex: F
race: cau
tissue.origin: Skin
|
AG08048 fibroblast cell line
|
| Sample_geo_accession | GSM426267
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426267/suppl/GSM426267.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426268 | GPL570 |
|
AG08904
|
AG08904
|
age: 45
sex: M
race: cau
tissue.origin: Skin
|
AG08904 fibroblast cell line
|
| Sample_geo_accession | GSM426268
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426268/suppl/GSM426268.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426269 | GPL570 |
|
AG09699
|
AG09699
|
age: 46
sex: M
race: black
tissue.origin: Skin
|
AG09699 fibroblast cell line
|
| Sample_geo_accession | GSM426269
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426269/suppl/GSM426269.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426270 | GPL570 |
|
AG09877
|
AG09877
|
age: 54
sex: F
race: cau
tissue.origin: Skin
|
AG09877 fibroblast cell line
|
| Sample_geo_accession | GSM426270
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426270/suppl/GSM426270.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426271 | GPL570 |
|
AG10049
|
AG10049
|
age: 48
sex: M
race: cau
tissue.origin: Skin
|
AG10049 fibroblast cell line
|
| Sample_geo_accession | GSM426271
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426271/suppl/GSM426271.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426272 | GPL570 |
|
AG10941
|
AG10941
|
age: 48
sex: M
race: cau
tissue.origin: Skin
|
AG10941 fibroblast cell line
|
| Sample_geo_accession | GSM426272
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426272/suppl/GSM426272.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426273 | GPL570 |
|
AG11696
|
AG11696
|
age: 56
sex: F
race: cau
tissue.origin: Skin
|
AG11696 fibroblast cell line
|
| Sample_geo_accession | GSM426273
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426273/suppl/GSM426273.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426274 | GPL570 |
|
AG11726
|
AG11726
|
age: 56
sex: F
race: cau
tissue.origin: Skin
|
AG11726 fibroblast cell line
|
| Sample_geo_accession | GSM426274
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426274/suppl/GSM426274.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426275 | GPL570 |
|
AG13066
|
AG13066
|
age: 42
sex: F
race: cau
tissue.origin: Skin
|
AG13066 fibroblast cell line
|
| Sample_geo_accession | GSM426275
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426275/suppl/GSM426275.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426276 | GPL570 |
|
AG13150
|
AG13150
|
age: 52
sex: F
race: cau
tissue.origin: Skin
|
AG13150 fibroblast cell line
|
| Sample_geo_accession | GSM426276
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426276/suppl/GSM426276.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426277 | GPL570 |
|
AG14446
|
AG14446
|
age: 44
sex: F
race: black
tissue.origin: Skin
|
AG14446 fibroblast cell line
|
| Sample_geo_accession | GSM426277
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | coriell
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426277/suppl/GSM426277.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426278 | GPL570 |
|
CRL2054
|
CRL2054
|
age: 68
sex: F
race: NA
tissue.origin: Skin
|
CRL2054 fibroblast cell line
|
| Sample_geo_accession | GSM426278
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426278/suppl/GSM426278.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426279 | GPL570 |
|
CCD1108SK
|
CCD1108SK
|
age: 24
sex: M
race: cau
tissue.origin: Skin
|
CCD1108SK fibroblast cell line
|
| Sample_geo_accession | GSM426279
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426279/suppl/GSM426279.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426280 | GPL570 |
|
GM00144
|
GM00144
|
age: 34
sex: F
race: cau
tissue.origin: Skin
|
GM00144 fibroblast cell line
|
| Sample_geo_accession | GSM426280
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Sep 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM00144
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426280/suppl/GSM426280.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426281 | GPL570 |
|
GM02767
|
GM02767
|
age: 14
sex: F
race: cau
tissue.origin: Skin
|
GM02767 fibroblast cell line
|
| Sample_geo_accession | GSM426281
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Sep 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM02767
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426281/suppl/GSM426281.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426282 | GPL570 |
|
GM06944
|
GM06944
|
age: 24
sex: F
race: cau
tissue.origin: Skin
|
GM06944 fibroblast cell line
|
| Sample_geo_accession | GSM426282
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Sep 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM06944
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426282/suppl/GSM426282.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426283 | GPL570 |
|
CCD8Lu
|
CCD8Lu
|
age: 48
sex: M
race: cau
tissue.origin: Lung
|
CCD8Lu fibroblast cell line
|
| Sample_geo_accession | GSM426283
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426283/suppl/GSM426283.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426284 | GPL570 |
|
CCD11Lu
|
CCD11Lu
|
age: 9
sex: M
race: asn
tissue.origin: Lung
|
CCD11Lu fibroblast cell line
|
| Sample_geo_accession | GSM426284
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426284/suppl/GSM426284.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426285 | GPL570 |
|
CCD13Lu
|
CCD13Lu
|
age: 71
sex: M
race: black
tissue.origin: Lung
|
CCD13Lu fibroblast cell line
|
| Sample_geo_accession | GSM426285
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426285/suppl/GSM426285.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426286 | GPL570 |
|
CCD16Lu
|
CCD16Lu
|
age: 35
sex: M
race: cau
tissue.origin: Lung
|
CCD16Lu fibroblast cell line
|
| Sample_geo_accession | GSM426286
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426286/suppl/GSM426286.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426287 | GPL570 |
|
CCD19Lu
|
CCD19Lu
|
age: 20
sex: F
race: cau
tissue.origin: Lung
|
CCD19Lu fibroblast cell line
|
| Sample_geo_accession | GSM426287
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426287/suppl/GSM426287.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426288 | GPL570 |
|
CCD25Lu
|
CCD25Lu
|
age: 7
sex: M
race: cau
tissue.origin: Lung
|
CCD25Lu fibroblast cell line
|
| Sample_geo_accession | GSM426288
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426288/suppl/GSM426288.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426289 | GPL570 |
|
CCD29Lu
|
CCD29Lu
|
age: 80
sex: M
race: black
tissue.origin: Lung
|
CCD29Lu fibroblast cell line
|
| Sample_geo_accession | GSM426289
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426289/suppl/GSM426289.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426290 | GPL570 |
|
CCD33Lu
|
CCD33Lu
|
age: 7
sex: M
race: cau
tissue.origin: Lung
|
CCD33Lu fibroblast cell line
|
| Sample_geo_accession | GSM426290
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426290/suppl/GSM426290.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
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GSM426291 | GPL570 |
|
LL47
|
LL47
|
age: 16
sex: M
race: black
tissue.origin: Lung
|
LL47 fibroblast cell line
|
| Sample_geo_accession | GSM426291
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426291/suppl/GSM426291.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
| | |
|
GSM426292 | GPL570 |
|
LL86
|
LL86
|
age: 18
sex: M
race: cau
tissue.origin: Lung
|
LL86 fibroblast cell line
|
| Sample_geo_accession | GSM426292
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Jul 09 2009
| | Sample_last_update_date | Aug 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | atcc
| | Sample_growth_protocol_ch1 | fibroblasts were cultured in DMEM supplemented with 10% fetal calf serum, L-glutamine, penicillin, and streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy protocol and reagents for extraction of total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One-Cycle Target Labeling and Control Reagents (Part#900493) + Enzo BioArray High Yield RNA Transcript Labelling Kit (Part#42655)
| | Sample_hyb_protocol = Microarray | Affymetrix GeneChip Human Genome U133 Plus 2.0. Affymetrix Hybridization Oven= 645. Affymetrix Fluidics Station= 450. Fluidics Protocol= EukGE-WS2
| | Sample_scan_protocol | Affymetrix GeneChip Scanner= 3000-7G. Controller= GCOS
| | Sample_data_processing | MAS5 algorithm as implemented by call.exprs function of Bioconductor simpleaffy package version 2.14.05, 2% trimmed mean set to 100
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ben,S.,Wittner
| | Sample_contact_email | wittner.ben@mgh.harvard.edu
| | Sample_contact_laboratory | Ramaswamy
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 01945
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM426nnn/GSM426292/suppl/GSM426292.CEL.gz
| | Sample_series_id | GSE17032
| | Sample_data_row_count | 54675
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