Search results for the GEO ID: GSE1709 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM24817 | GPL201 |
|
Donor 2 1g 0 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 million cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 µg/mL Con A + 4 µg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at –80°C.
Lot batch = 2001663
|
Sample_geo_accession | GSM24817
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Jun 11 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24817/suppl/GSM24817.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24817/suppl/GSM24817.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24817/suppl/GSM24817.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29564 | GPL201 |
|
Donor 2 1g 4 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001663
|
Sample_geo_accession | GSM29564
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29564/suppl/GSM29564.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29564/suppl/GSM29564.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29564/suppl/GSM29564.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29565 | GPL201 |
|
Donor 2 vg 0 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29565
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29565/suppl/GSM29565.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29565/suppl/GSM29565.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29565/suppl/GSM29565.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29566 | GPL201 |
|
Donor 2 vg 4 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29566
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29566/suppl/GSM29566.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29566/suppl/GSM29566.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29566/suppl/GSM29566.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29567 | GPL201 |
|
Donor 4 1g 0 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29567
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29567/suppl/GSM29567.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29567/suppl/GSM29567.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29567/suppl/GSM29567.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29568 | GPL201 |
|
Donor 4 1g 4 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29568
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29568/suppl/GSM29568.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29568/suppl/GSM29568.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29568/suppl/GSM29568.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29569 | GPL201 |
|
Donor 4 vg 0 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29569
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29569/suppl/GSM29569.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29569/suppl/GSM29569.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29569/suppl/GSM29569.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29570 | GPL201 |
|
Donor 4 vg 4 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29570
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29570/suppl/GSM29570.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29570/suppl/GSM29570.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29570/suppl/GSM29570.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29571 | GPL201 |
|
Donor 5 1g 0 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29571
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29571/suppl/GSM29571.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29571/suppl/GSM29571.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29571/suppl/GSM29571.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29572 | GPL201 |
|
Donor 5 1g 4 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29572
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29572/suppl/GSM29572.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29572/suppl/GSM29572.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29572/suppl/GSM29572.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
| |
|
GSM29573 | GPL201 |
|
Donor 5 vg 0 hr
|
T-cells, peripheral blood
|
|
Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
|
Sample_geo_accession | GSM29573
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29573/suppl/GSM29573.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29573/suppl/GSM29573.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29573/suppl/GSM29573.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
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GSM29574 | GPL201 |
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Donor 5 vg 4 hr
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T-cells, peripheral blood
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Peripheral blood leukocytes of three human donors were isolated from blood bank buffy-coat preparations by Ficoll-Hypaque density gradient centrifugation, and T-cells were purified with high affinity negative selection human CD3+ T-cell enrichment columns. The cells were resuspended in RPMI-1640 with 10% FCS with approximately 3-8 millions cells/mL at room temperature overnight. T-cells were then either unactivated (1g 0 hr), activated (1g 4 hr) with a final concentration of 5 mg/mL Con A + 4 mg/mL anti-CD28 antibody and incubated for 4 hours at 37°C, or loaded onto a RPM rotating at 60°/s. T-cells loaded on the RPM were cultured for 2 hours prior to collection or activation to allow equilibration of cells to the new environment. After incubation, 1 mL of 4 M guanidinium isothiocyanate in 750 mM sodium citrate buffer, pH 7, with N-lauroylsarcosine and ß-mercaptoethanol was added to lyse cells and stabilize RNA. Lysates were frozen at -80°C.
Lot batch = 2001996
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Sample_geo_accession | GSM29574
| Sample_status | Public on Aug 25 2005
| Sample_submission_date | Aug 25 2004
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL201
| Sample_contact_name | Jim,,Boonyaratanakornkit
| Sample_contact_email | jim.boonyaratanakornkit@gmail.com
| Sample_contact_phone | 301-594-2589
| Sample_contact_laboratory | RVS
| Sample_contact_department | LID
| Sample_contact_institute | NIH - NIAID
| Sample_contact_address | 50 South Dr, Bldg 50, Rm 6513
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29574/suppl/GSM29574.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29574/suppl/GSM29574.EXP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM29nnn/GSM29574/suppl/GSM29574.rpt.gz
| Sample_series_id | GSE1709
| Sample_data_row_count | 8793
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