Search results for the GEO ID: GSE17112  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM428024 | GPL1261 |
|
LLC-PSF1P-EGFP_low, biological rep1
|
LLC-PSF1P-EGFP xenograft tumor
|
cell line: lewis lung carcinoma (LLC)
psf1 expression: low
biological replicate: 1
tumor stage: 4 weeks after innocuation
innocuation site: s.c.
|
Gene expression data from sorted PSF1 low expression cells of LLC-PSF1P-EGFP
|
| Sample_geo_accession | GSM428024
| | Sample_status | Public on Mar 31 2010
| | Sample_submission_date | Jul 15 2009
| | Sample_last_update_date | Mar 31 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | LLC-PSF1P-EGFP or colon26-PSF1P-EGFP were innocuated into s.c. of mice and disected after 4(LLC-PSF1P-EGFP) or 2(colon26-PSF1P-EGFP) weeks after innocuation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the AFFYMETRIX GeneChip Scanner 7G
| | Sample_data_processing | The data were analyzed with RMA using R/Bioconductor and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nobuyuki,,Takakura
| | Sample_contact_email | ntakaku@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8312
| | Sample_contact_fax | 81-6-6879-8314
| | Sample_contact_department | Signal Transduction
| | Sample_contact_institute | The Research Institute for Microbial Disease, Osaka university
| | Sample_contact_address | Yamada-oka 3-1
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM428nnn/GSM428024/suppl/GSM428024.CEL.gz
| | Sample_series_id | GSE17112
| | Sample_data_row_count | 45101
| | |
|
GSM428025 | GPL1261 |
|
LLC-PSF1P-EGFP_low, biological rep2
|
LLC-PSF1P-EGFP xenograft tumor
|
cell line: lewis lung carcinoma (LLC)
psf1 expression: low
biological replicate: 2
tumor stage: 4 weeks after innocuation
innocuation site: s.c.
|
Gene expression data from sorted PSF1 low expression cells of LLC-PSF1P-EGFP
|
| Sample_geo_accession | GSM428025
| | Sample_status | Public on Mar 31 2010
| | Sample_submission_date | Jul 15 2009
| | Sample_last_update_date | Mar 31 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | LLC-PSF1P-EGFP or colon26-PSF1P-EGFP were innocuated into s.c. of mice and disected after 4(LLC-PSF1P-EGFP) or 2(colon26-PSF1P-EGFP) weeks after innocuation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the AFFYMETRIX GeneChip Scanner 7G
| | Sample_data_processing | The data were analyzed with RMA using R/Bioconductor and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nobuyuki,,Takakura
| | Sample_contact_email | ntakaku@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8312
| | Sample_contact_fax | 81-6-6879-8314
| | Sample_contact_department | Signal Transduction
| | Sample_contact_institute | The Research Institute for Microbial Disease, Osaka university
| | Sample_contact_address | Yamada-oka 3-1
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM428nnn/GSM428025/suppl/GSM428025.CEL.gz
| | Sample_series_id | GSE17112
| | Sample_data_row_count | 45101
| | |
|
GSM428026 | GPL1261 |
|
LLC-PSF1P-EGFP_high, biological rep1
|
LLC-PSF1P-EGFP xenograft tumor
|
cell line: lewis lung carcinoma (LLC)
psf1 expression: high
biological replicate: 1
tumor stage: 4 weeks after innocuation
innocuation site: s.c.
|
Gene expression data from sorted PSF1 high expression cells of LLC-PSF1P-EGFP
|
| Sample_geo_accession | GSM428026
| | Sample_status | Public on Mar 31 2010
| | Sample_submission_date | Jul 15 2009
| | Sample_last_update_date | Mar 31 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | LLC-PSF1P-EGFP or colon26-PSF1P-EGFP were innocuated into s.c. of mice and disected after 4(LLC-PSF1P-EGFP) or 2(colon26-PSF1P-EGFP) weeks after innocuation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the AFFYMETRIX GeneChip Scanner 7G
| | Sample_data_processing | The data were analyzed with RMA using R/Bioconductor and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nobuyuki,,Takakura
| | Sample_contact_email | ntakaku@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8312
| | Sample_contact_fax | 81-6-6879-8314
| | Sample_contact_department | Signal Transduction
| | Sample_contact_institute | The Research Institute for Microbial Disease, Osaka university
| | Sample_contact_address | Yamada-oka 3-1
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM428nnn/GSM428026/suppl/GSM428026.CEL.gz
| | Sample_series_id | GSE17112
| | Sample_data_row_count | 45101
| | |
|
GSM428027 | GPL1261 |
|
LLC-PSF1P-EGFP_high, biological rep2
|
LLC-PSF1P-EGFP xenograft tumor
|
cell line: lewis lung carcinoma (LLC)
psf1 expression: high
biological replicate: 2
tumor stage: 4 weeks after innocuation
innocuation site: s.c.
|
Gene expression data from sorted PSF1 high expression cells of LLC-PSF1P-EGFP
|
| Sample_geo_accession | GSM428027
| | Sample_status | Public on Mar 31 2010
| | Sample_submission_date | Jul 15 2009
| | Sample_last_update_date | Mar 31 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | LLC-PSF1P-EGFP or colon26-PSF1P-EGFP were innocuated into s.c. of mice and disected after 4(LLC-PSF1P-EGFP) or 2(colon26-PSF1P-EGFP) weeks after innocuation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the AFFYMETRIX GeneChip Scanner 7G
| | Sample_data_processing | The data were analyzed with RMA using R/Bioconductor and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nobuyuki,,Takakura
| | Sample_contact_email | ntakaku@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8312
| | Sample_contact_fax | 81-6-6879-8314
| | Sample_contact_department | Signal Transduction
| | Sample_contact_institute | The Research Institute for Microbial Disease, Osaka university
| | Sample_contact_address | Yamada-oka 3-1
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM428nnn/GSM428027/suppl/GSM428027.CEL.gz
| | Sample_series_id | GSE17112
| | Sample_data_row_count | 45101
| | |
|
GSM428028 | GPL1261 |
|
colon26-PSF1P-EGFP_low, biological rep1
|
colon26-PSF1P-EGFP xenograft tumor
|
cell line: colon cancer (colon26)
psf1 expression: low
biological replicate: 1
tumor stage: 2 weeks after innocuation
innocuation site: s.c.
|
Gene expression data from sorted PSF1 low expression cells of LLC-PSF1P-EGFP
|
| Sample_geo_accession | GSM428028
| | Sample_status | Public on Mar 31 2010
| | Sample_submission_date | Jul 15 2009
| | Sample_last_update_date | Mar 31 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | LLC-PSF1P-EGFP or colon26-PSF1P-EGFP were innocuated into s.c. of mice and disected after 4(LLC-PSF1P-EGFP) or 2(colon26-PSF1P-EGFP) weeks after innocuation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the AFFYMETRIX GeneChip Scanner 7G
| | Sample_data_processing | The data were analyzed with RMA using R/Bioconductor and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nobuyuki,,Takakura
| | Sample_contact_email | ntakaku@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8312
| | Sample_contact_fax | 81-6-6879-8314
| | Sample_contact_department | Signal Transduction
| | Sample_contact_institute | The Research Institute for Microbial Disease, Osaka university
| | Sample_contact_address | Yamada-oka 3-1
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM428nnn/GSM428028/suppl/GSM428028.CEL.gz
| | Sample_series_id | GSE17112
| | Sample_data_row_count | 45101
| | |
|
GSM428029 | GPL1261 |
|
colon26-PSF1P-EGFP_low, biological rep2
|
colon26-PSF1P-EGFP xenograft tumor
|
cell line: colon cancer (colon26)
psf1 expression: low
biological replicate: 2
tumor stage: 2 weeks after innocuation
innocuation site: s.c.
|
Gene expression data from sorted PSF1 low expression cells of LLC-PSF1P-EGFP
|
| Sample_geo_accession | GSM428029
| | Sample_status | Public on Mar 31 2010
| | Sample_submission_date | Jul 15 2009
| | Sample_last_update_date | Mar 31 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | LLC-PSF1P-EGFP or colon26-PSF1P-EGFP were innocuated into s.c. of mice and disected after 4(LLC-PSF1P-EGFP) or 2(colon26-PSF1P-EGFP) weeks after innocuation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the AFFYMETRIX GeneChip Scanner 7G
| | Sample_data_processing | The data were analyzed with RMA using R/Bioconductor and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nobuyuki,,Takakura
| | Sample_contact_email | ntakaku@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8312
| | Sample_contact_fax | 81-6-6879-8314
| | Sample_contact_department | Signal Transduction
| | Sample_contact_institute | The Research Institute for Microbial Disease, Osaka university
| | Sample_contact_address | Yamada-oka 3-1
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM428nnn/GSM428029/suppl/GSM428029.CEL.gz
| | Sample_series_id | GSE17112
| | Sample_data_row_count | 45101
| | |
|
GSM428030 | GPL1261 |
|
colon26-PSF1P-EGFP_high, biological rep1
|
colon26-PSF1P-EGFP xenograft tumor
|
cell line: colon cancer (colon26)
psf1 expression: high
biological replicate: 1
tumor stage: 2 weeks after innocuation
innocuation site: s.c.
|
Gene expression data from sorted PSF1 high expression cells of LLC-PSF1P-EGFP
|
| Sample_geo_accession | GSM428030
| | Sample_status | Public on Mar 31 2010
| | Sample_submission_date | Jul 15 2009
| | Sample_last_update_date | Mar 31 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | LLC-PSF1P-EGFP or colon26-PSF1P-EGFP were innocuated into s.c. of mice and disected after 4(LLC-PSF1P-EGFP) or 2(colon26-PSF1P-EGFP) weeks after innocuation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the AFFYMETRIX GeneChip Scanner 7G
| | Sample_data_processing | The data were analyzed with RMA using R/Bioconductor and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nobuyuki,,Takakura
| | Sample_contact_email | ntakaku@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8312
| | Sample_contact_fax | 81-6-6879-8314
| | Sample_contact_department | Signal Transduction
| | Sample_contact_institute | The Research Institute for Microbial Disease, Osaka university
| | Sample_contact_address | Yamada-oka 3-1
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM428nnn/GSM428030/suppl/GSM428030.CEL.gz
| | Sample_series_id | GSE17112
| | Sample_data_row_count | 45101
| | |
|
GSM428031 | GPL1261 |
|
colon26-PSF1P-EGFP_high, biological rep2
|
colon26-PSF1P-EGFP xenograft tumor
|
cell line: colon cancer (colon26)
psf1 expression: high
biological replicate: 2
tumor stage: 2 weeks after innocuation
innocuation site: s.c.
|
Gene expression data from sorted PSF1 high expression cells of LLC-PSF1P-EGFP
|
| Sample_geo_accession | GSM428031
| | Sample_status | Public on Mar 31 2010
| | Sample_submission_date | Jul 15 2009
| | Sample_last_update_date | Mar 31 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | LLC-PSF1P-EGFP or colon26-PSF1P-EGFP were innocuated into s.c. of mice and disected after 4(LLC-PSF1P-EGFP) or 2(colon26-PSF1P-EGFP) weeks after innocuation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the AFFYMETRIX GeneChip Scanner 7G
| | Sample_data_processing | The data were analyzed with RMA using R/Bioconductor and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nobuyuki,,Takakura
| | Sample_contact_email | ntakaku@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8312
| | Sample_contact_fax | 81-6-6879-8314
| | Sample_contact_department | Signal Transduction
| | Sample_contact_institute | The Research Institute for Microbial Disease, Osaka university
| | Sample_contact_address | Yamada-oka 3-1
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM428nnn/GSM428031/suppl/GSM428031.CEL.gz
| | Sample_series_id | GSE17112
| | Sample_data_row_count | 45101
| | |
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