Search results for the GEO ID: GSE17172  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM429557 | GPL8300 |
|
ST486_Fox1 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with FOXM1 shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: FOXM1 shRNA (Sigma TRCN0000015546)
time: 24h
|
Lentiviral-mediated expression of FOXM1 shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429557
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429557/suppl/GSM429557_ST486_Fox1.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429558 | GPL8300 |
|
ST486_Fox2 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with FOXM1 shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: FOXM1 shRNA (Sigma TRCN0000015546)
time: 24h
|
Lentiviral-mediated expression of FOXM1 shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429558
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429558/suppl/GSM429558_ST486_Fox2.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429559 | GPL8300 |
|
ST486_Fox3 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with FOXM1 shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: FOXM1 shRNA (Sigma TRCN0000015546)
time: 24h
|
Lentiviral-mediated expression of FOXM1 shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429559
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429559/suppl/GSM429559_ST486_Fox3.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429560 | GPL8300 |
|
ST486_MYB1 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with MYB shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: MYB shRNA (Sigma TRCN0000040062)
time: 24h
|
Lentiviral-mediated expression of MYB shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429560
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429560/suppl/GSM429560_ST486_MYB1.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429561 | GPL8300 |
|
ST486_MYB2 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with MYB shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: MYB shRNA (Sigma TRCN0000040062)
time: 24h
|
Lentiviral-mediated expression of MYB shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429561
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429561/suppl/GSM429561_ST486_MYB2.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429562 | GPL8300 |
|
ST486_MYB3 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with MYB shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: MYB shRNA (Sigma TRCN0000040062)
time: 24h
|
Lentiviral-mediated expression of MYB shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429562
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429562/suppl/GSM429562_ST486_MYB3.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429563 | GPL8300 |
|
ST486_NT1 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with NT control shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: non-target control shRNA (Sigma SHC002)
time: 24h
|
Lentiviral-mediated expression of non-target control shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429563
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429563/suppl/GSM429563_ST486_NT1.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429564 | GPL8300 |
|
ST486_NT2 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with NT control shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: non-target control shRNA (Sigma SHC002)
time: 24h
|
Lentiviral-mediated expression of non-target control shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429564
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429564/suppl/GSM429564_ST486_NT2.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429565 | GPL8300 |
|
ST486_NT3 (MAS5)
|
ST486 Burkitt's lymphoma cells transduced with NT control shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: non-target control shRNA (Sigma SHC002)
time: 24h
|
Lentiviral-mediated expression of non-target control shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429565
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by MAS5 implemented in affy package / bioconductor (www.bioconductor.org), and log2 transformation
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429565/suppl/GSM429565_ST486_NT3.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429566 | GPL8300 |
|
ST486_Fox1 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with FOXM1 shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: FOXM1 shRNA (Sigma TRCN0000015546)
time: 24h
|
Lentiviral-mediated expression of FOXM1 shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429566
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429566/suppl/GSM429566_ST486_Fox_1.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429567 | GPL8300 |
|
ST486_Fox2 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with FOXM1 shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: FOXM1 shRNA (Sigma TRCN0000015546)
time: 24h
|
Lentiviral-mediated expression of FOXM1 shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429567
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429567/suppl/GSM429567_ST486_Fox_2.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429568 | GPL8300 |
|
ST486_Fox3 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with FOXM1 shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: FOXM1 shRNA (Sigma TRCN0000015546)
time: 24h
|
Lentiviral-mediated expression of FOXM1 shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429568
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429568/suppl/GSM429568_ST486_Fox_3.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429569 | GPL8300 |
|
ST486_MYB1 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with MYB shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: MYB shRNA (Sigma TRCN0000040062)
time: 24h
|
Lentiviral-mediated expression of MYB shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429569
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429569/suppl/GSM429569_ST486_MYB_1.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429570 | GPL8300 |
|
ST486_MYB2 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with MYB shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: MYB shRNA (Sigma TRCN0000040062)
time: 24h
|
Lentiviral-mediated expression of MYB shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429570
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429570/suppl/GSM429570_ST486_MYB_2.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429571 | GPL8300 |
|
ST486_MYB3 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with MYB shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: MYB shRNA (Sigma TRCN0000040062)
time: 24h
|
Lentiviral-mediated expression of MYB shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429571
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429571/suppl/GSM429571_ST486_MYB_3.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429572 | GPL8300 |
|
ST486_NT1 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with NT control shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: non-target control shRNA (Sigma SHC002)
time: 24h
|
Lentiviral-mediated expression of non-target control shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429572
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429572/suppl/GSM429572_ST486_NT_1.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429573 | GPL8300 |
|
ST486_NT2 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with NT control shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: non-target control shRNA (Sigma SHC002)
time: 24h
|
Lentiviral-mediated expression of non-target control shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429573
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429573/suppl/GSM429573_ST486_NT_2.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
GSM429574 | GPL8300 |
|
ST486_NT3 (gcrma)
|
ST486 Burkitt's lymphoma cells transduced with NT control shRNA lentivirus-vector for 24h
|
cell_line: ST486
transduction: non-target control shRNA (Sigma SHC002)
time: 24h
|
Lentiviral-mediated expression of non-target control shRNA in ST486 Burkitt's lymphoma cells for 24h. 5 ug of total RNA were hybridized in Affymetrix U95Av2 expression arrays.
|
| Sample_geo_accession | GSM429574
| | Sample_status | Public on Jul 27 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Jul 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL followed by RNAeasy (Qiagen) columns cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix one cycle cDNA synthesis protocol (Affymetrix 701025 Rev 6)
| | Sample_hyb_protocol | According to Affymetrix 701025 rev 6
| | Sample_scan_protocol | The arrays were processed on a Gene Chip Fluidics Station 450 and scanned on a Affymetrix GeneChip Scanner (Santa Clara, CA).
| | Sample_data_processing | Normalization and summarization by gcrma implemented in gcrma package / bioconductor (www.bioconductor.org), using fast parameter set to FALSE
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mariano,Javier,Alvarez
| | Sample_contact_email | malvarez@c2b2.columbia.edu
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | Joint Centers for Systems Biology
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas ave.
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429574/suppl/GSM429574_ST486_NT_3.CEL.gz
| | Sample_series_id | GSE17172
| | Sample_data_row_count | 12625
| | |
|
| |
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